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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217579 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00226774_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 7 1351 NP_057260.2
NM_016547.2 7 1467 NP_057631.1
AF132749.1 7 1265 AAL75950.1
AF153686.1 7 1447 AAD51612.1
AF178986.1 7 1431 AAF44350.1
AK000717.1 5 2214
AK027277.1 8 943 BAB55012.1
AK055331.1 2 1946
AK075352.1 7 1285 BAC11563.1
AK126927.1 3 2869
AK222521.1 7 1269 BAD96241.1
AK223079.1 7 1267 BAD96799.1
AK315517.1 7 1270
BC006211.2 7 1232 AAH06211.1
BC007625.1 6 1100 AAH07625.1
BC008917.2 7 1251 AAH08917.1
BC011244.1 7 1205 AAH11244.1
BC022375.1 7 1285 AAH22375.1
L79912.1 6 1030 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 B3GALT6 SDF4 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MMP23B LOC100506504 LOC105378591 ACAP3 SCNN1D MIR200B FNDC10 SDF4 ISG15 ANKRD65 SAMD11 B3GALT6 MIR6726 MXRA8 CDK11A MIR200A WASH7P C1orf159 PLEKHN1 LOC100288069 CPSF3L HES4 LINC01342 TMEM88B NADK DVL1 PERM1 LOC284600 OR4F16 ATAD3A SKI TMEM240 CALML6 LINC00115 CDK11B RNF223 LOC107984841 FAAP20 SLC35E2 LOC100134822 SLC35E2B LOC100133331 LOC105378949 MIB2 MMP23A MIR6859-1 PRKCZ ATAD3B LOC105378948 MTND2P28 MIR429 TAS1R3 CPTP LOC101928626 GNB1 MORN1 NOC2L VWA1 LOC107985728 MIR6727 CFAP74 LINC01128 OR4F29 AURKAIP1 UBE2J2 LOC105378592 TNFRSF18 LOC102724312 FAM132A MIR6859-2 TTLL10-AS1 MTND1P23 LOC100287934 LOC105378589 FAM87B MRPL20 LOC107985729 GABRD LOC100129534 PUSL1 KLHL17 MIR1302-2 LOC729737 AGRN ATAD3C DDX11L1 TNFRSF4 LOC148413 OR4F5 CCNL2 LOC100132287 FAM138A LOC105378947 LOC100130417 SSU72 MIR6808 TMEM52 LOC102725121 MIR6723 LOC100288175 FAM41C TTLL10
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LOC105378948 TTLL10-AS1 MIR429 RNF223 C1orf159 SCNN1D MIR200B SDF4 TNFRSF4 LINC01342 UBE2J2 B3GALT6 TNFRSF18 FAM132A MIR200A TTLL10
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TTLL10-AS1 MIR429 TAS1R3 CPTP ACAP3 SCNN1D MIR200B SDF4 B3GALT6 MIR6726 PUSL1 MXRA8 MIR200A MIR6727 RNF223 C1orf159 TNFRSF4 CPSF3L LINC01342 AURKAIP1 UBE2J2 TNFRSF18 MIR6808 FAM132A DVL1 TTLL10
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 B3GALT6 TNFRSF18 SDF4 TNFRSF4 TTLL10
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC105378948 TTLL10-AS1 MIR429 TAS1R3 CPTP ACAP3 SCNN1D MIR200B SDF4 B3GALT6 MIR6726 PUSL1 MIR200A AGRN MIR6727 RNF223 C1orf159 TNFRSF4 CPSF3L LINC01342 UBE2J2 TNFRSF18 FAM132A LOC100288175 TTLL10
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC105378948 TTLL10-AS1 MIR429 MIR200B SDF4 ISG15 PERM1 SAMD11 LOC284600 KLHL17 NOC2L MIR200A LOC107985728 AGRN RNF223 C1orf159 TNFRSF4 PLEKHN1 HES4 LINC01342 LOC100130417 TNFRSF18 LOC100288175 FAM41C TTLL10
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC105378948 MMP23B MIR429 TAS1R3 CPTP ACAP3 SCNN1D MIR200B FNDC10 SDF4 ISG15 ANKRD65 SAMD11 B3GALT6 MIR6726 MXRA8 NOC2L VWA1 CDK11A MIR200A LOC107985728 MIR6727 LINC01128 C1orf159 PLEKHN1 LOC100288069 CPSF3L HES4 LINC01342 AURKAIP1 UBE2J2 TMEM88B TNFRSF18 NADK LOC102724312 FAM132A DVL1 TTLL10-AS1 LOC100287934 PERM1 LOC284600 FAM87B MRPL20 LOC107985729 ATAD3A TMEM240 PUSL1 KLHL17 LINC00115 CDK11B AGRN RNF223 ATAD3C TNFRSF4 SLC35E2 LOC148413 CCNL2 SLC35E2B LOC100130417 MIB2 MMP23A SSU72 MIR6808 LOC100288175 ATAD3B FAM41C TTLL10
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B TTLL10-AS1 MIR429 TAS1R3 CPTP ACAP3 SCNN1D MIR200B FNDC10 SDF4 ANKRD65 MRPL20 LOC107985729 ATAD3A B3GALT6 TMEM240 MIR6726 PUSL1 MXRA8 VWA1 MIR200A CDK11B MIR6727 C1orf159 ATAD3C TNFRSF4 CPSF3L LOC148413 CCNL2 LINC01342 AURKAIP1 UBE2J2 TMEM88B MIB2 TNFRSF18 SSU72 LOC102724312 MIR6808 FAM132A DVL1 ATAD3B TTLL10
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC105378948 TTLL10-AS1 MIR429 MIR200B SDF4 ISG15 PERM1 SAMD11 LOC284600 FAM87B B3GALT6 KLHL17 NOC2L LINC00115 MIR200A LOC107985728 AGRN RNF223 LINC01128 C1orf159 TNFRSF4 PLEKHN1 HES4 LINC01342 UBE2J2 LOC100130417 TNFRSF18 FAM132A LOC100288175 FAM41C TTLL10
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC105378948 AGRN TTLL10-AS1 MIR429 RNF223 C1orf159 MIR200B SDF4 ISG15 TNFRSF4 PERM1 PLEKHN1 SAMD11 HES4 LINC01342 TNFRSF18 KLHL17 NOC2L LOC100288175 MIR200A TTLL10
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC105378948 TTLL10-AS1 MIR429 TAS1R3 CPTP ACAP3 SCNN1D MIR200B SDF4 ISG15 PERM1 ANKRD65 SAMD11 LOC284600 MRPL20 B3GALT6 MIR6726 PUSL1 KLHL17 MXRA8 NOC2L MIR200A LOC107985728 AGRN MIR6727 RNF223 C1orf159 TNFRSF4 PLEKHN1 CPSF3L LOC148413 CCNL2 HES4 LINC01342 AURKAIP1 UBE2J2 LOC100130417 TMEM88B TNFRSF18 MIR6808 FAM132A DVL1 LOC100288175 TTLL10
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6727 TTLL10-AS1 MIR429 ACAP3 SCNN1D MIR200B SDF4 TNFRSF4 CPSF3L UBE2J2 B3GALT6 MIR6726 TNFRSF18 PUSL1 FAM132A MIR200A TTLL10

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