Genomic Map
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Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | 3 | 478 | NP_001275721.1 | |
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | 3 | 478 | NP_940883.2 | |
| NR_110142.1 | 3 | 478 | ||
| XM_011526845.1 | 3 | 491 | XP_011525147.1 | |
| XM_011526846.1 | 3 | 491 | XP_011525148.1 | |
| XM_011526847.1 | 3 | 491 | XP_011525149.1 | |
| XM_011526848.1 | 3 | 491 | XP_011525150.1 | |
| XM_011526849.1 | 3 | 491 | XP_011525151.1 | |
| XM_017026666.1 | 3 | 491 | XP_016882155.1 | |
| AY358542.1 | 3 | 487 | AAQ88906.1 | |
| BC100943.2 | 3 | 455 | AAI00944.1 | |
| BQ446114.1 | 7 | 555 | ||
| DQ479397.1 | 3 | 319 | ||
| FJ584316.1 | 3 | 313 | ||
| FJ584317.1 | 3 | 313 | ||
| FJ584318.1 | 3 | 313 | ||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | 3 | 313 | ||
| FN398145.1 | 3 | 306 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
 TARM1
PRPF31
TFPT
NDUFA3
VSTM1
OSCAR
|
| nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
MIR935
TARM1
CACNG8
VSTM1
CACNG6
|
| nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
TARM1
VSTM1
OSCAR
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
MIR935
CACNG8
VSTM1
CACNG7
CACNG6
|
| nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain |
VSTM1
|
| esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain |
VSTM1
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
MIR520D
ZNF761
RPS9
MIR518A2
ZNF845
ZNF813
TARM1
PRPF31
MIR371B
MIR4752
MIR517B
MIR520H
MIR1283-1
MIR373
FAM90A27P
MIR515-2
MIR526B
MIR517A
LOC105372457
NLRP12
MIR518B
TPM3P9
VN1R2
CACNG7
LILRA6
MIR517C
MIR518E
MIR519C
MIR519B
MIR526A1
MIR516A2
LENG1
MBOAT7
MIR522
MIR520G
CACNG6
ZNF331
MIR371A
MIR524
PRKCG
TMC4
ZNF818P
MIR521-2
MIR935
MIR515-1
MIR519A2
MIR1283-2
ZNF765
MIR519D
LILRA5
MIR519A1
MIR516B2
VN1R4
MIR518D
DPRX
MIR512-2
NDUFA3
VSTM1
MIR516B1
MIR526A2
ZNF677
MIR520C
MIR521-1
OSCAR
MIR372
MIR518F
MIR512-1
MYADM
LILRB3
LILRB5
MIR1323
TFPT
MIR519E
MIR525
ZNF525
MIR527
BIRC8
MIR520E
MIR498
MIR523
MIR520F
LOC284379
MIR520A
MIR516A1
MIR518C
CACNG8
LILRB2
ZNF665
CNOT3
TSEN34
MIR518A1
MIR520B
|
| nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
MIR935
TARM1
CACNG8
PRPF31
TFPT
NDUFA3
VSTM1
CACNG6
OSCAR
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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