Hs00326552_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54041939 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 10 - Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BG189223.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	OSCAR VSTM1 TFPT PRPF31 NDUFA3 TARM1
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 MIR935 CACNG6 CACNG8 TARM1
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	VSTM1 CACNG6 CACNG8
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 MIR935 CACNG6 CACNG8 CACNG7
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	OSCAR FAM90A27P PRPF31 MIR372 ZNF665 CNOT3 MIR519C TARM1 MIR518C MIR516A1 MIR521-1 MIR520G MIR519B BIRC8 LILRA6 TFPT ZNF761 ZNF818P MIR498 LILRB3 CACNG7 MIR527 LILRA5 TPM3P9 MIR373 MIR1283-1 ZNF525 RPS9 VN1R4 MIR512-2 ZNF677 LENG1 MIR525 MIR517B MIR521-2 PRKCG ZNF813 MIR516A2 MIR515-1 MIR526A2 LILRB2 MIR371A VN1R2 MIR935 MIR519A2 MIR520D TMC4 LILRB5 MIR520B LOC105372457 MIR520F MIR518E MIR518F MIR518A2 MIR526B MIR517C MIR516B1 ZNF765 MIR520A MIR520E MYADM MIR515-2 MIR520H MIR524 MIR512-1 MIR1283-2 MIR519E DPRX VSTM1 MIR526A1 TSEN34 NDUFA3 CACNG6 LOC284379 MIR1323 NLRP12 ZNF331 MIR518D MIR519A1 MIR516B2 MIR523 ZNF845 MIR522 MIR4752 MIR518A1 MBOAT7 MIR517A CACNG8 MIR519D MIR520C MIR518B MIR371B
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	OSCAR VSTM1 TFPT PRPF31 MIR935 NDUFA3 CACNG6 CACNG8 TARM1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity