Hs00326552_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54041939 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 10 - Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BG189223.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 TARM1 CACNG6 VSTM1 CACNG8
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	OSCAR TARM1 NDUFA3 PRPF31 TFPT VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG7 CACNG6 VSTM1 CACNG8
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG6 VSTM1 CACNG8
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR523 MIR527 MIR1283-1 MIR518B MIR526A1 MIR4752 NLRP12 MIR520D LOC105372457 NDUFA3 MYADM TPM3P9 ZNF677 MIR520C MIR517C MIR522 LILRB2 TSEN34 MIR519D MBOAT7 MIR518C MIR526A2 MIR518D MIR512-1 MIR517A MIR373 MIR519B MIR520B MIR518E RPS9 MIR516B2 LILRB5 MIR516A2 MIR371B MIR518F MIR516B1 MIR520A MIR521-2 MIR518A2 MIR1283-2 ZNF845 LOC284379 BIRC8 MIR516A1 CACNG6 LILRA6 MIR526B CNOT3 ZNF813 TMC4 TARM1 MIR1323 MIR517B MIR520F FAM90A27P MIR519C VN1R2 MIR512-2 MIR518A1 ZNF761 MIR371A MIR520H LILRA5 VN1R4 DPRX MIR935 PRKCG ZNF525 MIR521-1 LENG1 MIR520G PRPF31 MIR520E VSTM1 MIR525 OSCAR MIR519A2 CACNG7 ZNF818P MIR372 MIR515-2 MIR519A1 ZNF665 ZNF765 MIR515-1 TFPT LILRB3 ZNF331 MIR519E MIR524 CACNG8 MIR498
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 OSCAR TARM1 NDUFA3 PRPF31 CACNG6 TFPT VSTM1 CACNG8

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity