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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1223372 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00374607_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 MIR429 MIR200B AGRN CPTP FAM132A CPSF3L C1orf159 LOC105378948 TNFRSF4 TAS1R3 RNF223 SCNN1D B3GALT6 ACAP3 TNFRSF18 MIR6727 TTLL10 LINC01342 TTLL10-AS1 MIR200A UBE2J2 SDF4 MIR6726 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288069 HES4 MIB2 LOC100288175 AURKAIP1 MIR429 ATAD3A TMEM88B PLEKHN1 AGRN CCNL2 FAM132A C1orf159 MMP23A TNFRSF4 LOC107985728 TAS1R3 SCNN1D B3GALT6 TNFRSF18 SLC35E2 LOC107985729 TTLL10-AS1 FNDC10 FAM41C VWA1 MIR6808 MIR200A UBE2J2 ANKRD65 SSU72 MIR6726 TMEM240 PUSL1 MMP23B KLHL17 MXRA8 LOC100287934 SAMD11 MIR200B LOC100130417 CPTP DVL1 LINC01128 MRPL20 CPSF3L LOC105378948 ISG15 PERM1 RNF223 ACAP3 LINC00115 MIR6727 TTLL10 LINC01342 LOC102724312 FAM87B SLC35E2B CDK11A ATAD3C SDF4 NADK NOC2L ATAD3B LOC284600 LOC148413 CDK11B
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss FAM132A UBE2J2 SDF4 B3GALT6
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100288069 LOC100288175 MIR429 TMEM88B LOC101928626 MIR1302-2 MMP23A LOC107985728 TAS1R3 B3GALT6 SLC35E2 LOC107984841 OR4F16 LOC107985729 OR4F5 FNDC10 FAM41C VWA1 MIR6808 LOC100132287 MIR200A LOC729737 UBE2J2 TMEM240 MXRA8 GNB1 LOC100133331 MIR6859-2 LOC105378589 MORN1 DVL1 MRPL20 CPSF3L LOC105378948 FAM138A ISG15 PERM1 FAAP20 CALML6 MIR6859-1 OR4F29 LOC102724312 FAM87B MIR6723 PRKCZ MTND1P23 SLC35E2B NOC2L ATAD3B TMEM52 CDK11B HES4 LOC105378949 MIB2 AURKAIP1 ATAD3A LOC100129534 PLEKHN1 AGRN CCNL2 FAM132A C1orf159 WASH7P TNFRSF4 SCNN1D TNFRSF18 TTLL10-AS1 MTND2P28 ANKRD65 SSU72 MIR6726 PUSL1 MMP23B KLHL17 LOC100287934 SAMD11 MIR200B LOC100130417 CPTP LINC01128 LOC105378592 CFAP74 RNF223 ACAP3 LINC00115 LOC100506504 LOC105378591 MIR6727 LOC102725121 TTLL10 SKI LINC01342 LOC105378947 DDX11L1 CDK11A ATAD3C SDF4 NADK GABRD LOC100134822 LOC284600 LOC148413
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIB2 AURKAIP1 MIR429 ATAD3A TMEM88B MIR200B CPTP DVL1 MRPL20 CCNL2 FAM132A CPSF3L C1orf159 TNFRSF4 TAS1R3 SCNN1D B3GALT6 ACAP3 TNFRSF18 MIR6727 TTLL10 LINC01342 LOC102724312 LOC107985729 TTLL10-AS1 FNDC10 VWA1 MIR6808 MIR200A UBE2J2 ATAD3C ANKRD65 SDF4 SSU72 MIR6726 TMEM240 PUSL1 MMP23B ATAD3B LOC148413 MXRA8 CDK11B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 LOC100288175 SAMD11 MIR429 MIR200B LOC100130417 PLEKHN1 AGRN LINC01128 FAM132A C1orf159 LOC105378948 ISG15 TNFRSF4 LOC107985728 PERM1 RNF223 B3GALT6 LINC00115 TNFRSF18 TTLL10 LINC01342 FAM87B TTLL10-AS1 FAM41C MIR200A UBE2J2 SDF4 NOC2L LOC284600 KLHL17
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 LOC100288175 SAMD11 AURKAIP1 MIR429 TMEM88B MIR200B LOC100130417 PLEKHN1 AGRN CPTP DVL1 MRPL20 CCNL2 FAM132A CPSF3L C1orf159 LOC105378948 ISG15 TNFRSF4 LOC107985728 PERM1 TAS1R3 RNF223 SCNN1D B3GALT6 ACAP3 TNFRSF18 MIR6727 TTLL10 LINC01342 TTLL10-AS1 MIR6808 MIR200A UBE2J2 ANKRD65 SDF4 MIR6726 PUSL1 NOC2L LOC284600 KLHL17 LOC148413 MXRA8
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF18 TTLL10 LINC01342 MIR429 MIR200B TTLL10-AS1 MIR200A FAM132A UBE2J2 C1orf159 LOC105378948 SDF4 TNFRSF4 RNF223 SCNN1D B3GALT6
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss AURKAIP1 MIR429 MIR200B CPTP DVL1 FAM132A CPSF3L C1orf159 TNFRSF4 TAS1R3 RNF223 SCNN1D B3GALT6 ACAP3 TNFRSF18 MIR6727 TTLL10 LINC01342 TTLL10-AS1 MIR6808 MIR200A UBE2J2 SDF4 MIR6726 PUSL1 MXRA8
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TTLL10 SDF4 TNFRSF4 B3GALT6 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF18 MIR6727 TTLL10 MIR429 MIR200B TTLL10-AS1 MIR200A FAM132A CPSF3L UBE2J2 SDF4 TNFRSF4 MIR6726 SCNN1D B3GALT6 PUSL1 ACAP3

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