Genomic Map
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Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | 3 | 379 | NP_001275721.1 | |
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | 3 | 379 | NP_940883.2 | |
| NR_110142.1 | 3 | 379 | ||
| XM_011526845.1 | 3 | 392 | XP_011525147.1 | |
| XM_011526846.1 | 3 | 392 | XP_011525148.1 | |
| XM_011526847.1 | 3 | 392 | XP_011525149.1 | |
| XM_011526848.1 | 3 | 392 | XP_011525150.1 | |
| XM_011526849.1 | 3 | 392 | XP_011525151.1 | |
| XM_017026666.1 | 3 | 392 | XP_016882155.1 | |
| AY358542.1 | 3 | 388 | AAQ88906.1 | |
| BC100943.2 | 3 | 356 | AAI00944.1 | |
| DQ479397.1 | 3 | 220 | ||
| FJ584316.1 | 3 | 214 | ||
| FJ584317.1 | 3 | 214 | ||
| FJ584318.1 | 3 | 214 | ||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | 3 | 214 | ||
| FN398145.1 | 3 | 207 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
 VSTM1
TFPT
NDUFA3
OSCAR
TARM1
PRPF31
|
| nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
VSTM1
CACNG6
CACNG8
MIR935
TARM1
|
| nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
VSTM1
OSCAR
TARM1
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
VSTM1
CACNG6
CACNG8
CACNG7
MIR935
|
| nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain |
VSTM1
|
| esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain |
VSTM1
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
MIR527
MIR521-1
MIR373
MIR372
LENG1
TFPT
MIR518A2
ZNF813
ZNF677
MIR519D
MIR520B
TMC4
MIR522
MIR520E
LILRA5
CACNG6
PRKCG
MIR516A1
MIR371B
CACNG8
RPS9
MIR4752
MIR517C
MIR523
MIR518B
DPRX
MIR519A1
ZNF761
NLRP12
MIR526B
ZNF765
ZNF818P
MIR518D
MIR518A1
LOC284379
ZNF665
MIR526A2
MIR520G
MIR520H
MIR1283-1
MIR518C
MIR519C
VN1R4
LILRB5
MIR518F
TARM1
MIR517B
MIR518E
VSTM1
MIR512-2
MIR371A
CACNG7
MIR516B2
MIR516B1
MIR520C
MIR525
MIR520F
LOC105372457
MIR526A1
MIR519E
MIR519A2
MIR524
MIR519B
MBOAT7
LILRB2
MIR521-2
MIR498
ZNF331
MIR1323
BIRC8
NDUFA3
MIR515-2
MYADM
ZNF845
FAM90A27P
MIR520D
MIR520A
MIR935
MIR1283-2
MIR515-1
OSCAR
VN1R2
MIR517A
TSEN34
MIR516A2
CNOT3
ZNF525
TPM3P9
LILRB3
LILRA6
MIR512-1
PRPF31
|
| nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
VSTM1
CACNG6
CACNG8
TFPT
MIR935
NDUFA3
OSCAR
TARM1
PRPF31
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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