Hs00402797_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54042347 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BG189223.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6 TARM1 MIR935
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT OSCAR VSTM1 PRPF31 TARM1 NDUFA3
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 VSTM1 CACNG8 CACNG6 MIR935
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR518A2 OSCAR CACNG8 MIR519C MIR372 ZNF525 CNOT3 LILRB3 MIR527 MIR520A ZNF765 TFPT ZNF665 PRPF31 LOC284379 MIR1283-2 LILRB2 MIR518C MIR519D MIR520B MBOAT7 MIR520E MIR935 ZNF845 MIR498 MIR521-1 MIR526B TPM3P9 PRKCG MIR524 MIR516A1 MIR517A CACNG6 MYADM LOC105372457 MIR526A2 MIR516B2 NLRP12 MIR520H MIR522 MIR521-2 ZNF331 MIR516A2 MIR518B LILRB5 TMC4 MIR519E TSEN34 ZNF761 MIR515-2 MIR515-1 MIR517C ZNF813 TARM1 MIR519A1 MIR520F MIR517B BIRC8 MIR373 MIR525 MIR4752 FAM90A27P MIR526A1 MIR520G MIR520D MIR520C MIR518E CACNG7 MIR519A2 VSTM1 VN1R2 LILRA5 MIR518F RPS9 VN1R4 MIR516B1 MIR371A MIR512-2 MIR523 NDUFA3 LENG1 MIR518A1 MIR1323 MIR519B MIR512-1 LILRA6 DPRX ZNF677 ZNF818P MIR518D MIR371B MIR1283-1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT OSCAR VSTM1 CACNG8 PRPF31 CACNG6 TARM1 MIR935 NDUFA3

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity