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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1223994 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00418457_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SCNN1D AGRN MIR429 MIR6726 PUSL1 ACAP3 B3GALT6 TAS1R3 C1orf159 MIR200A CPSF3L LOC105378948 TTLL10 TNFRSF18 TNFRSF4 LINC01342 LOC100288175 RNF223 SDF4 UBE2J2 CPTP MIR200B FAM132A MIR6727 TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SSU72 HES4 LOC102724312 AURKAIP1 CCNL2 MMP23A AGRN MIR429 LOC100287934 PUSL1 ACAP3 CDK11B LOC148413 B3GALT6 SLC35E2B TAS1R3 LINC00115 MIB2 CPSF3L LOC105378948 MMP23B FAM87B CPTP MIR200B FAM132A TTLL10-AS1 FNDC10 VWA1 KLHL17 LINC01128 ATAD3A MRPL20 SCNN1D ANKRD65 TMEM240 TMEM88B NADK PERM1 SLC35E2 LOC100130417 PLEKHN1 NOC2L LOC107985728 MIR6726 ATAD3C MXRA8 LOC107985729 LOC100288069 SAMD11 C1orf159 MIR200A CDK11A MIR6808 DVL1 FAM41C TTLL10 TNFRSF18 TNFRSF4 LINC01342 ISG15 LOC100288175 RNF223 SDF4 UBE2J2 ATAD3B MIR6727 LOC284600
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss B3GALT6 SDF4 UBE2J2 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SSU72 LOC102724312 CCNL2 MMP23A LOC100287934 ACAP3 TAS1R3 FAAP20 MIB2 CPSF3L MIR6859-2 OR4F5 MIR6859-1 CPTP TMEM52 MIR200B FAM132A TTLL10-AS1 GNB1 VWA1 KLHL17 MIR1302-2 ATAD3A MRPL20 ANKRD65 TMEM240 OR4F16 SKI LOC100134822 TMEM88B PERM1 MIR6723 PLEKHN1 NOC2L LOC107985728 ATAD3C MXRA8 CFAP74 SAMD11 LOC100506504 FAM41C LOC102725121 TNFRSF18 LOC101928626 TNFRSF4 LINC01342 ISG15 LOC100288175 RNF223 SDF4 UBE2J2 ATAD3B LOC100133331 LOC284600 LOC105378591 DDX11L1 HES4 AURKAIP1 GABRD LOC729737 AGRN MIR429 PUSL1 CDK11B LOC148413 B3GALT6 SLC35E2B PRKCZ LOC105378947 LINC00115 LOC105378948 MMP23B MTND2P28 FAM87B LOC105378589 FNDC10 MORN1 LINC01128 LOC100129534 SCNN1D WASH7P CALML6 NADK SLC35E2 LOC100130417 OR4F29 LOC100132287 FAM138A MIR6726 MTND1P23 LOC107985729 LOC100288069 C1orf159 MIR200A CDK11A LOC105378592 MIR6808 DVL1 LOC105378949 LOC107984841 TTLL10 MIR6727
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FNDC10 VWA1 SSU72 ATAD3A MRPL20 SCNN1D ANKRD65 TMEM240 LOC102724312 AURKAIP1 TMEM88B CCNL2 MIR429 MIR6726 ATAD3C PUSL1 MXRA8 ACAP3 LOC107985729 CDK11B LOC148413 B3GALT6 TAS1R3 C1orf159 MIR200A MIR6808 DVL1 MIB2 CPSF3L MMP23B TTLL10 TNFRSF18 TNFRSF4 LINC01342 SDF4 UBE2J2 ATAD3B CPTP MIR200B FAM132A MIR6727 TTLL10-AS1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss KLHL17 LINC01128 HES4 PERM1 LOC100130417 PLEKHN1 NOC2L LOC107985728 AGRN MIR429 B3GALT6 SAMD11 C1orf159 MIR200A LINC00115 FAM41C LOC105378948 TTLL10 TNFRSF18 TNFRSF4 LINC01342 FAM87B ISG15 LOC100288175 RNF223 SDF4 UBE2J2 MIR200B FAM132A TTLL10-AS1 LOC284600
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain KLHL17 MRPL20 SCNN1D ANKRD65 HES4 AURKAIP1 TMEM88B PERM1 LOC100130417 PLEKHN1 CCNL2 NOC2L LOC107985728 AGRN MIR429 MIR6726 PUSL1 MXRA8 ACAP3 LOC148413 B3GALT6 SAMD11 TAS1R3 C1orf159 MIR200A MIR6808 DVL1 CPSF3L LOC105378948 TTLL10 TNFRSF18 TNFRSF4 LINC01342 ISG15 LOC100288175 RNF223 SDF4 UBE2J2 CPTP MIR200B FAM132A MIR6727 TTLL10-AS1 LOC284600
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain B3GALT6 SCNN1D C1orf159 MIR200A LOC105378948 TTLL10 TNFRSF18 TNFRSF4 LINC01342 MIR429 RNF223 SDF4 UBE2J2 MIR200B FAM132A TTLL10-AS1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss SCNN1D AURKAIP1 MIR429 MIR6726 PUSL1 MXRA8 ACAP3 B3GALT6 TAS1R3 C1orf159 MIR200A MIR6808 DVL1 CPSF3L TTLL10 TNFRSF18 TNFRSF4 LINC01342 RNF223 SDF4 UBE2J2 CPTP MIR200B FAM132A MIR6727 TTLL10-AS1
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF18 B3GALT6 TNFRSF4 SDF4 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain B3GALT6 SCNN1D MIR200A CPSF3L TTLL10 TNFRSF18 TNFRSF4 MIR429 SDF4 MIR6726 UBE2J2 PUSL1 ACAP3 MIR200B FAM132A MIR6727 TTLL10-AS1

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