Hs00430469_cn

• Gene Symbol: SCP2
• Assay Reference Genome Location: Chr.1:52978308 on build GRCh38
• Cytoband: 1p32.3

Target Gene Details

• Entrez Gene ID: 6342
• Gene Name: sterol carrier protein 2
• Gene Aliases: NLTP, NSL-TP, SCP-2, SCP-CHI, SCP-X, SCPX
• Location: Chr.1:52927229-53051617 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SCP2	NM_001007098.2	8	802	NP_001007099.1
	NM_001193599.1	8	862	NP_001180528.1
	NM_001193600.1	8	802	NP_001180529.1
	NM_001193617.1	8	876	NP_001180546.1
	NM_002979.4	9	934	NP_002970.2
	XM_005271103.4	9	877	XP_005271160.1
	XM_011541935.2	9	877	XP_011540237.1
	XM_017002045.1	9	877	XP_016857534.1
	AB208789.1	9	886	BAD92026.1
	AK294631.1	8	805
	AK295214.1	8	819
	AK308105.1	8	744
	AK312856.1	9	885
	BC067108.1	8	713	AAH67108.1
	M75883.1	9	787	AAA03557.1
	M75884.1			AAA03558.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1010121	Chr.1:52939995 - 53134678 on Build GRCh38	Gain	MIR1273G SLC1A7 PODN SCP2
nsv1001535	Chr.1:52620368 - 53346539 on Build GRCh38	Gain	MIR1273F MIR1273G COA7 MAGOH MIR5095 C1orf123 FAM159A LRP8 LOC100507564 CPT2 LOC105378732 ZYG11A SLC1A7 ZYG11B PODN ECHDC2 SCP2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase, transfer/carrier protein

Gene Ontology Categories:

Process(es)

bile acid biosynthetic process
peroxisome organization
sterol transport
positive regulation of intracellular cholesterol transport
fatty acid beta-oxidation using acyl-CoA oxidase
alpha-linolenic acid metabolic process
lipid hydroperoxide transport

Function(s)

fatty-acyl-CoA binding
receptor binding
protein binding
sterol transporter activity
cholesterol binding
propanoyl-CoA C-acyltransferase activity
long-chain fatty acyl-CoA binding
propionyl-CoA C2-trimethyltridecanoyltransferase activity
oleic acid binding