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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:935790 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00583564_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv14n54 Chr.1:934063 - 938178 on Build GRCh38 Gain SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100288175 RNF223 SAMD11 NOC2L PLEKHN1 AGRN LOC284600 LOC107985728 HES4 ISG15 LOC100130417 PERM1 LOC105378948 KLHL17 C1orf159
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378592 NOC2L LOC148413 LOC107984841 LOC105378949 MIR200B FAAP20 LINC01342 LOC101928626 MIR200A PERM1 AURKAIP1 CALML6 LOC100133331 LOC107985729 OR4F5 SSU72 DDX11L1 SCNN1D SKI LOC102725121 OR4F29 TTLL10 LOC100132287 LOC105378589 MORN1 MTND1P23 LOC102724312 SLC35E2 MMP23A CPTP LOC729737 LOC100506504 NADK CDK11A CCNL2 MMP23B CFAP74 TNFRSF18 SAMD11 PLEKHN1 LOC100134822 LOC107985728 OR4F16 MIR6727 MIR429 LOC105378948 C1orf159 WASH7P LOC100287934 MIR1302-2 MIR6723 LOC105378591 LINC00115 DVL1 GNB1 MXRA8 MIR6808 FNDC10 LOC100288069 MIR6859-1 GABRD TMEM240 CPSF3L MIB2 PUSL1 LINC01128 ATAD3A FAM41C LOC284600 MIR6726 FAM138A UBE2J2 KLHL17 B3GALT6 TAS1R3 LOC100129534 ATAD3B RNF223 TMEM88B CDK11B AGRN TMEM52 TTLL10-AS1 ATAD3C SDF4 HES4 PRKCZ MTND2P28 FAM87B SLC35E2B LOC100288175 VWA1 MIR6859-2 MRPL20 TNFRSF4 ISG15 ANKRD65 LOC100130417 FAM132A ACAP3 LOC105378947
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100288175 RNF223 SAMD11 NOC2L PLEKHN1 AGRN LOC284600 LOC107985728 HES4 ISG15 LOC100130417 PERM1 LOC105378948 KLHL17 C1orf159
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 PERM1 SAMD11 NOC2L PLEKHN1 LOC284600 KLHL17 LOC107985728
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv544932 Chr.1:934429 - 938178 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain RNF223 NOC2L AGRN MIR200B TTLL10-AS1 SDF4 HES4 LINC01342 MIR200A PERM1 TNFRSF18 LOC100288175 SAMD11 FAM41C PLEKHN1 LOC284600 LOC107985728 TNFRSF4 ISG15 TTLL10 LOC100130417 MIR429 LOC105378948 KLHL17 C1orf159
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LINC00115 RNF223 NOC2L LOC107984841 AGRN HES4 MTND2P28 LOC101928626 PERM1 LOC100288069 FAM87B LINC01128 LOC100133331 LOC100288175 SAMD11 FAM41C PLEKHN1 LOC284600 LOC107985728 ISG15 OR4F16 LOC100130417 LOC105378948 KLHL17 C1orf159 MTND1P23 LOC100287934 LOC105378947 MIR6723
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC00115 DVL1 NOC2L LOC148413 MXRA8 MIR6808 MIR200B LINC01342 MIR200A PERM1 FNDC10 AURKAIP1 LOC100288069 TMEM240 CPSF3L MIB2 PUSL1 LINC01128 LOC107985729 SSU72 ATAD3A FAM41C LOC284600 MIR6726 SCNN1D TTLL10 UBE2J2 KLHL17 B3GALT6 LOC102724312 SLC35E2 TAS1R3 ATAD3B MMP23A RNF223 TMEM88B CDK11B AGRN CPTP TTLL10-AS1 ATAD3C SDF4 HES4 NADK CDK11A FAM87B CCNL2 SLC35E2B MMP23B TNFRSF18 LOC100288175 VWA1 SAMD11 MRPL20 PLEKHN1 LOC107985728 TNFRSF4 ISG15 ANKRD65 MIR6727 LOC100130417 MIR429 FAM132A LOC105378948 C1orf159 ACAP3 LOC100287934
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC100133331 LINC00115 SAMD11 FAM41C LOC107984841 LOC284600 LOC107985728 OR4F16 LOC100130417 LOC100288069 FAM87B LOC100287934 LINC01128
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC00115 RNF223 NOC2L AGRN MIR200B TTLL10-AS1 SDF4 HES4 LINC01342 MIR200A PERM1 FAM87B LINC01128 TNFRSF18 LOC100288175 SAMD11 FAM41C PLEKHN1 LOC284600 LOC107985728 TNFRSF4 ISG15 TTLL10 UBE2J2 LOC100130417 MIR429 FAM132A LOC105378948 KLHL17 B3GALT6 C1orf159
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC100130417 LINC00115 SAMD11 FAM41C FAM87B LOC284600 LOC107985728 LOC100287934 LINC01128
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TAS1R3 RNF223 TMEM88B DVL1 NOC2L LOC148413 MXRA8 AGRN CPTP MIR6808 MIR200B TTLL10-AS1 SDF4 HES4 LINC01342 MIR200A PERM1 AURKAIP1 CCNL2 CPSF3L PUSL1 TNFRSF18 LOC100288175 SAMD11 MRPL20 PLEKHN1 LOC284600 MIR6726 SCNN1D LOC107985728 TNFRSF4 ISG15 TTLL10 ANKRD65 UBE2J2 MIR6727 LOC100130417 MIR429 FAM132A LOC105378948 KLHL17 B3GALT6 C1orf159 ACAP3
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC100130417 PERM1 SAMD11 NOC2L PLEKHN1 AGRN LOC284600 KLHL17 LOC107985728 HES4 ISG15
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 PERM1 SAMD11 FAM41C NOC2L PLEKHN1 LOC284600 KLHL17 LOC107985728 HES4 LINC01128
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728
nsv544924 Chr.1:934170 - 938178 on Build GRCh38 Gain+Loss SAMD11

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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