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Gene Symbol
LIME1
Assay Reference Genome
Location

Chr.20:63739070 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00620345_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54923

Gene Name:

 Lck interacting transmembrane adaptor 1

Gene Aliases:

 LIME, dJ583P15.4

Location:

 Chr.20:63735701-63739107 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIME1 NM_001305654.1 NP_001292583.1
NM_001305655.1 NP_001292584.1
NM_017806.3 NP_060276.2
AI763397.1
AK000413.1 BAA91148.1
AK054722.1
AY203957.1 AAP34480.1
BC017016.1 AAH17016.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion LIME1 SLC2A4RG ZGPAT ZBTB46
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion LIME1 RTEL1 ZBTB46-AS1 ARFRP1 SLC2A4RG ZGPAT RTEL1-TNFRSF6B STMN3 ZBTB46 TNFRSF6B
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
dgv7684n54 Chr.20:63738644 - 63789659 on Build GRCh38 Loss LIME1 SLC2A4RG ZBTB46
nsv586643 Chr.20:63738872 - 63740448 on Build GRCh38 Gain LIME1 SLC2A4RG
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion LIME1 RTEL1 ARFRP1 SLC2A4RG ZGPAT RTEL1-TNFRSF6B STMN3 ZBTB46 TNFRSF6B
nsv586618 Chr.20:63736025 - 63740688 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss UCKL1-AS1 TCEA2 MIR941-4 ZBTB46-AS1 RGS19 SLC2A4RG ABHD16B MYT1 UCKL1 C20orf181 RTEL1 MIR6813 GMEB2 LINC00266-1 ARFRP1 MIR1914 TPD52L2 DNAJC5 MIR941-1 SAMD10 PRPF6 ZGPAT LOC100505771 STMN3 MIR647 NPBWR2 ZBTB46 LINC00176 LIME1 ZNF512B PCMTD2 MIR941-5 SOX18 MIR941-3 MIR941-2 RTEL1-TNFRSF6B OPRL1 LKAAEAR1 TNFRSF6B
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss LIME1 SLC2A4RG ZGPAT ZBTB46
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain LIME1 SLC2A4RG ZGPAT ZBTB46
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss EEF1A2 SLC2A4RG ZGPAT LOC100505771 STMN3 SRMS ZBTB46 PPDPF LIME1 RTEL1 GMEB2 ARFRP1 RTEL1-TNFRSF6B HELZ2 PTK6 TNFRSF6B FNDC11
esv29394 Chr.20:63737285 - 63740490 on Build GRCh38 Loss LIME1 SLC2A4RG
dgv7682n54 Chr.20:63737667 - 63740090 on Build GRCh38 Loss LIME1 SLC2A4RG
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss KCNQ2 EEF1A2 SLC2A4RG ZGPAT LOC100505771 STMN3 SRMS ZBTB46 PPDPF LIME1 RTEL1 GMEB2 ARFRP1 RTEL1-TNFRSF6B HELZ2 PTK6 TNFRSF6B FNDC11
dgv7679n54 Chr.20:63737451 - 63740688 on Build GRCh38 Gain LIME1 SLC2A4RG

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s)


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