Hs00633440_cn

• Gene Symbol: GATA1
• Assay Reference Genome Location: Chr.X:48794308 on build GRCh38
• Cytoband: Xp11.23

Target Gene Details

• Entrez Gene ID: 2623
• Gene Name: GATA binding protein 1
• Gene Aliases: ERYF1, GATA-1, GF-1, GF1, NF-E1, NFE1, XLANP, XLTDA, XLTT
• Location: Chr.X:48786540-48794311 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATA1	NM_002049.3			NP_002040.1
	XM_011543897.2			XP_011542199.1
	XM_011543898.2			XP_011542200.1
	AI057349.1
	BC009797.1			AAH09797.1
	X17254.1			CAA35120.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv528292	Chr.X:48433286 - 49274368 on Build GRCh38	Gain	OTUD5 RBM3 PORCN MAGIX TBC1D25 WDR13 CACNA1F EBP CCDC120 SLC38A5 SLC35A2 HDAC6 PCSK1N SUV39H1 PQBP1 FOXP3 CCDC22 LOC101927635 WDR45 GLOD5 PLP2 GRIPAP1 SYP PRICKLE3 TFE3 ERAS FTSJ1 WAS GPKOW PIM2 GATA1 SYP-AS1 PRAF2 KCND1 PPP1R3F TIMM17B
esv32909	Chr.X:48003374 - 49285646 on Build GRCh38	Gain+Loss	OTUD5 RBM3 PORCN MAGIX TBC1D25 ZNF182 SSX9 WDR13 CACNA1F SSX4 EBP CCDC120 SLC38A5 SLC35A2 HDAC6 PCSK1N SSX6 SUV39H1 PQBP1 FOXP3 SSX3 CCDC22 SSX4B LOC101927635 WDR45 GLOD5 PLP2 SSX5 GRIPAP1 SYP SPACA5 PRICKLE3 TFE3 SPACA5B ERAS FTSJ1 WAS GPKOW PIM2 SSX1 GATA1 ZNF630 SYP-AS1 PRAF2 ZNF630-AS1 KCND1 PPP1R3F TIMM17B
esv3576862	Chr.X:48755018 - 48837713 on Build GRCh38	Gain	GLOD5 HDAC6 PCSK1N GATA1 ERAS
nsv6893	Chr.X:48778273 - 48810147 on Build GRCh38	Insertion	HDAC6 GATA1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
in utero embryonic development
transcription from RNA polymerase II promoter
cell-cell signaling
heart development
blood coagulation
negative regulation of cell proliferation
male gonad development
organ morphogenesis
tissue development
regulation of glycoprotein biosynthetic process
regulation of definitive erythrocyte differentiation
regulation of primitive erythrocyte differentiation
erythrocyte differentiation
megakaryocyte differentiation
platelet formation
basophil differentiation
eosinophil differentiation
negative regulation of bone mineralization
positive regulation of osteoblast proliferation
embryonic hemopoiesis
eosinophil fate commitment
negative regulation of apoptotic process
positive regulation of erythrocyte differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
erythrocyte development
homeostasis of number of cells within a tissue
positive regulation of peptidyl-tyrosine phosphorylation
platelet aggregation
transcriptional activation by promoter-enhancer looping
dendritic cell differentiation
cellular response to thyroid hormone stimulus
negative regulation of transcription regulatory region DNA binding
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
p53 binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
zinc ion binding
DNA binding, bending
chromatin DNA binding
sequence-specific DNA binding
C2H2 zinc finger domain binding