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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1218780 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00706866_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 6 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1 4 1782
AK027277.1 BAB55012.1
AK055331.1 1 1514
AK075352.1 BAC11563.1
AK126927.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss B3GALT6 UBE2J2 SDF4 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAAP20 LOC102725121 PUSL1 LOC100288069 LOC105378947 LOC100129534 LOC284600 LOC102724312 OR4F29 MIR1302-2 HES4 LINC00115 LOC107985728 LOC101928626 MIR6808 TNFRSF4 MIR429 LOC107985729 TTLL10-AS1 OR4F16 AURKAIP1 MMP23A MRPL20 DDX11L1 RNF223 FAM138A LOC100287934 ACAP3 ATAD3A MIR200A TTLL10 MIR6727 CDK11A SSU72 DVL1 TMEM240 LOC100130417 WASH7P ISG15 GNB1 MIB2 AGRN LOC100134822 SDF4 CDK11B OR4F5 B3GALT6 MIR6859-1 TNFRSF18 PRKCZ SLC35E2B LOC729737 VWA1 LOC100133331 ANKRD65 LOC148413 SKI SCNN1D MMP23B MIR6723 LOC105378948 LOC105378589 LOC107984841 CFAP74 LOC105378949 SAMD11 NADK MIR200B PLEKHN1 TMEM52 LOC100506504 LOC105378592 FAM87B NOC2L GABRD MIR6859-2 LINC01128 CPTP FNDC10 MORN1 PERM1 ATAD3B CCNL2 TAS1R3 MTND1P23 MIR6726 KLHL17 CPSF3L TMEM88B MXRA8 SLC35E2 ATAD3C CALML6 LOC105378591 MTND2P28 LINC01342 LOC100132287 FAM41C UBE2J2 LOC100288175 FAM132A C1orf159
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200B TNFRSF4 SCNN1D MIR429 RNF223 SDF4 LOC105378948 TTLL10-AS1 LINC01342 B3GALT6 MIR200A TTLL10 UBE2J2 TNFRSF18 FAM132A C1orf159
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TAS1R3 PUSL1 SCNN1D MIR6726 RNF223 CPSF3L ACAP3 MIR200A TTLL10 MIR6727 MXRA8 DVL1 MIR200B MIR6808 TNFRSF4 MIR429 SDF4 TTLL10-AS1 LINC01342 CPTP B3GALT6 UBE2J2 TNFRSF18 AURKAIP1 FAM132A C1orf159
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TTLL10 TNFRSF4 SDF4 TNFRSF18 TTLL10-AS1
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 PUSL1 SCNN1D MIR6726 RNF223 LOC105378948 CPSF3L ACAP3 MIR200A TTLL10 MIR6727 MIR200B TNFRSF4 MIR429 AGRN SDF4 TTLL10-AS1 LINC01342 CPTP B3GALT6 UBE2J2 TNFRSF18 LOC100288175 FAM132A C1orf159
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC284600 RNF223 KLHL17 LOC105378948 MIR200A TTLL10 HES4 SAMD11 LOC107985728 MIR200B PLEKHN1 TNFRSF4 LOC100130417 ISG15 NOC2L MIR429 AGRN SDF4 TTLL10-AS1 LINC01342 FAM41C PERM1 TNFRSF18 LOC100288175 C1orf159
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PUSL1 LOC100288069 VWA1 ANKRD65 LOC148413 LOC284600 SCNN1D LOC102724312 MMP23B LOC105378948 HES4 SAMD11 NADK LINC00115 LOC107985728 MIR200B MIR6808 PLEKHN1 TNFRSF4 FAM87B NOC2L MIR429 LOC107985729 LINC01128 TTLL10-AS1 CPTP FNDC10 PERM1 AURKAIP1 ATAD3B CCNL2 MMP23A TAS1R3 MRPL20 MIR6726 RNF223 KLHL17 CPSF3L LOC100287934 ACAP3 ATAD3A MIR200A TTLL10 MIR6727 TMEM88B CDK11A MXRA8 SLC35E2 ATAD3C SSU72 DVL1 TMEM240 LOC100130417 ISG15 MIB2 AGRN SDF4 CDK11B LINC01342 B3GALT6 FAM41C UBE2J2 TNFRSF18 SLC35E2B LOC100288175 FAM132A C1orf159
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TAS1R3 PUSL1 MRPL20 VWA1 ANKRD65 LOC148413 SCNN1D LOC102724312 MIR6726 MMP23B CPSF3L ACAP3 ATAD3A MIR200A TTLL10 MIR6727 TMEM88B MXRA8 ATAD3C SSU72 DVL1 MIR200B MIR6808 TNFRSF4 TMEM240 MIR429 MIB2 SDF4 CDK11B LOC107985729 TTLL10-AS1 LINC01342 CPTP FNDC10 B3GALT6 UBE2J2 TNFRSF18 AURKAIP1 ATAD3B CCNL2 FAM132A C1orf159
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC284600 RNF223 KLHL17 LOC105378948 MIR200A TTLL10 HES4 SAMD11 LINC00115 LOC107985728 MIR200B PLEKHN1 TNFRSF4 LOC100130417 FAM87B ISG15 NOC2L MIR429 AGRN SDF4 LINC01128 TTLL10-AS1 LINC01342 B3GALT6 FAM41C UBE2J2 PERM1 TNFRSF18 LOC100288175 FAM132A C1orf159
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion MIR200B PLEKHN1 TNFRSF4 ISG15 NOC2L MIR429 RNF223 AGRN KLHL17 SDF4 LOC105378948 TTLL10-AS1 LINC01342 MIR200A TTLL10 HES4 PERM1 SAMD11 TNFRSF18 LOC100288175 C1orf159
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TAS1R3 PUSL1 MRPL20 ANKRD65 LOC148413 LOC284600 SCNN1D MIR6726 RNF223 KLHL17 LOC105378948 CPSF3L ACAP3 MIR200A TTLL10 HES4 MIR6727 TMEM88B SAMD11 MXRA8 DVL1 LOC107985728 MIR200B MIR6808 PLEKHN1 TNFRSF4 LOC100130417 ISG15 NOC2L MIR429 AGRN SDF4 TTLL10-AS1 LINC01342 CPTP B3GALT6 UBE2J2 PERM1 TNFRSF18 AURKAIP1 LOC100288175 CCNL2 FAM132A C1orf159
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200B PUSL1 TNFRSF4 SCNN1D MIR6726 MIR429 SDF4 CPSF3L TTLL10-AS1 ACAP3 B3GALT6 MIR200A TTLL10 UBE2J2 MIR6727 TNFRSF18 FAM132A

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