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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1218544 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00836335_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 6 1155 NP_057260.2
NM_016547.2 6 1155 NP_057631.1
AF132749.1 6 1069 AAL75950.1
AF153686.1 6 1135 AAD51612.1
AF178986.1 6 1119 AAF44350.1
AK000717.1 4 2018
AK027277.1 7 747 BAB55012.1
AK055331.1 1 1750
AK075352.1 6 1089 BAC11563.1
AK126927.1 2 2673
AK222521.1 6 1073 BAD96241.1
AK223079.1 6 1071 BAD96799.1
AK315517.1 6 1074
BC006211.2 6 1036 AAH06211.1
BC007625.1 5 904 AAH07625.1
BC008917.2 6 1055 AAH08917.1
BC011244.1 6 1009 AAH11244.1
BC022375.1 6 1089 AAH22375.1
L79912.1 5 834 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 FAM132A SDF4 B3GALT6
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss OR4F29 TMEM52 PLEKHN1 TAS1R3 ATAD3A LOC100130417 FAM138A LOC100506504 CALML6 TNFRSF4 LOC105378948 LOC102724312 TMEM88B PRKCZ LOC107985729 CDK11A MIR6859-2 UBE2J2 LOC100134822 FAAP20 MIR6726 FNDC10 FAM87B DVL1 ATAD3B PERM1 MRPL20 LOC107985728 CFAP74 LOC105378591 NADK SLC35E2 ACAP3 MTND1P23 MIB2 FAM132A SKI LOC100133331 MIR6727 MIR6859-1 CCNL2 LOC100288069 CPTP SLC35E2B MIR200B C1orf159 MXRA8 MTND2P28 AURKAIP1 LOC100287934 ISG15 TMEM240 CPSF3L LOC148413 FAM41C TNFRSF18 MMP23B LOC100132287 MORN1 SDF4 LOC107984841 TTLL10 RNF223 LOC100288175 MIR6723 SSU72 MIR1302-2 ANKRD65 KLHL17 LINC01128 LOC105378949 TTLL10-AS1 GABRD MIR6808 LINC00115 LOC105378947 GNB1 NOC2L LOC105378589 MMP23A SAMD11 LOC729737 PUSL1 AGRN MIR200A B3GALT6 LOC100129534 CDK11B LINC01342 OR4F16 LOC105378592 VWA1 HES4 LOC284600 ATAD3C LOC102725121 LOC101928626 MIR429 OR4F5 DDX11L1 WASH7P SCNN1D
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 UBE2J2 TNFRSF18 MIR200B C1orf159 FAM132A MIR429 TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 B3GALT6 RNF223 TTLL10-AS1 SCNN1D
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss CPSF3L TAS1R3 PUSL1 ACAP3 TNFRSF18 FAM132A TNFRSF4 SDF4 MIR200A TTLL10 MIR6727 B3GALT6 RNF223 LINC01342 UBE2J2 MIR6726 CPTP MIR200B DVL1 C1orf159 MXRA8 MIR429 AURKAIP1 TTLL10-AS1 SCNN1D MIR6808
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TNFRSF4 SDF4 TTLL10 B3GALT6 TTLL10-AS1
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPSF3L TAS1R3 PUSL1 ACAP3 TNFRSF18 AGRN FAM132A TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 MIR6727 B3GALT6 RNF223 LOC100288175 LINC01342 UBE2J2 MIR6726 CPTP MIR200B C1orf159 MIR429 TTLL10-AS1 SCNN1D
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain NOC2L PLEKHN1 FAM41C LOC100130417 SAMD11 TNFRSF18 AGRN TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 RNF223 LOC100288175 LINC01342 HES4 LOC284600 MIR200B C1orf159 KLHL17 MIR429 PERM1 LOC107985728 ISG15 TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TMEM240 CPSF3L LOC148413 PLEKHN1 FAM41C TAS1R3 ATAD3A LOC100130417 TNFRSF18 MMP23B TNFRSF4 LOC105378948 SDF4 TTLL10 LOC102724312 TMEM88B RNF223 LOC107985729 LOC100288175 CDK11A UBE2J2 SSU72 MIR6726 FNDC10 FAM87B DVL1 ANKRD65 ATAD3B KLHL17 PERM1 MRPL20 LOC107985728 LINC01128 TTLL10-AS1 MIR6808 LINC00115 NOC2L MMP23A NADK SLC35E2 SAMD11 PUSL1 ACAP3 MIB2 AGRN FAM132A MIR200A MIR6727 B3GALT6 CDK11B LINC01342 CCNL2 LOC100288069 VWA1 CPTP HES4 SLC35E2B LOC284600 ATAD3C MIR200B C1orf159 MXRA8 MIR429 AURKAIP1 LOC100287934 ISG15 SCNN1D
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM240 CPSF3L LOC148413 TAS1R3 ATAD3A PUSL1 ACAP3 TNFRSF18 MMP23B MIB2 FAM132A TNFRSF4 SDF4 MIR200A TTLL10 LOC102724312 MIR6727 B3GALT6 TMEM88B CDK11B LOC107985729 LINC01342 UBE2J2 SSU72 MIR6726 CCNL2 VWA1 CPTP FNDC10 ATAD3C MIR200B DVL1 C1orf159 ANKRD65 MXRA8 ATAD3B MIR429 MRPL20 AURKAIP1 TTLL10-AS1 SCNN1D MIR6808
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC00115 NOC2L PLEKHN1 FAM41C LOC100130417 SAMD11 TNFRSF18 AGRN FAM132A TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 B3GALT6 RNF223 LOC100288175 LINC01342 UBE2J2 HES4 LOC284600 FAM87B MIR200B C1orf159 KLHL17 MIR429 PERM1 LOC107985728 LINC01128 ISG15 TTLL10-AS1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC100288175 LINC01342 NOC2L PLEKHN1 SAMD11 HES4 TNFRSF18 MIR200B C1orf159 AGRN KLHL17 MIR429 PERM1 TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 RNF223 ISG15 TTLL10-AS1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CPSF3L LOC148413 NOC2L PLEKHN1 TAS1R3 LOC100130417 SAMD11 PUSL1 ACAP3 TNFRSF18 AGRN FAM132A TNFRSF4 LOC105378948 SDF4 MIR200A TTLL10 MIR6727 B3GALT6 TMEM88B RNF223 LOC100288175 LINC01342 UBE2J2 MIR6726 CCNL2 CPTP HES4 LOC284600 MIR200B DVL1 C1orf159 ANKRD65 MXRA8 KLHL17 MIR429 PERM1 MRPL20 LOC107985728 AURKAIP1 ISG15 TTLL10-AS1 SCNN1D MIR6808
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L UBE2J2 MIR6726 PUSL1 ACAP3 TNFRSF18 MIR200B FAM132A MIR429 TNFRSF4 SDF4 MIR200A TTLL10 MIR6727 B3GALT6 TTLL10-AS1 SCNN1D

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