Hs00862059_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54041812 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 11 - Intron 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BG189223.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 TARM1 VSTM1 PRPF31 TFPT OSCAR
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG6 CACNG8 TARM1 VSTM1
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG6 CACNG8 VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG6 CACNG8 CACNG7 VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR518D MIR519D MIR517A MIR526A1 MIR517B MIR498 MYADM MIR518F ZNF818P MIR520B TFPT FAM90A27P LILRA5 LOC105372457 MIR516A2 MIR518A2 TMC4 VN1R2 MIR371B CACNG6 CACNG7 MIR521-1 MIR515-1 MIR1283-2 MIR516B2 CNOT3 NDUFA3 MIR520D MIR372 MIR518A1 MIR518E VN1R4 RPS9 MIR527 MIR1283-1 MBOAT7 TSEN34 ZNF331 MIR526B MIR516B1 MIR518C TPM3P9 ZNF813 PRKCG MIR520E ZNF525 MIR371A MIR4752 MIR520H OSCAR LILRB2 MIR935 MIR515-2 ZNF665 ZNF677 MIR520A DPRX MIR522 MIR521-2 CACNG8 MIR518B MIR524 MIR520C MIR520G MIR512-2 ZNF765 ZNF845 NLRP12 PRPF31 MIR525 MIR526A2 MIR519C MIR373 LOC284379 LILRB5 MIR519E MIR519A2 MIR512-1 MIR517C MIR523 MIR520F LENG1 MIR519A1 LILRB3 BIRC8 TARM1 MIR516A1 VSTM1 MIR519B LILRA6 ZNF761 MIR1323
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 MIR935 CACNG6 CACNG8 TARM1 VSTM1 PRPF31 TFPT OSCAR

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity