Hs00862059_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54041812 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 11 - Intron 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BG189223.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	TARM1 VSTM1 CACNG8 CACNG6 MIR935
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT TARM1 VSTM1 NDUFA3 PRPF31 OSCAR
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG7 CACNG6 MIR935
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	RPS9 MIR525 MIR520G MIR518A1 MIR373 MIR519E NLRP12 MIR1283-2 MIR371B VN1R4 CACNG6 MIR526A1 ZNF813 MIR516B1 MIR516A1 MBOAT7 DPRX VSTM1 ZNF765 LILRA6 FAM90A27P MIR518A2 MIR517C PRKCG MIR516B2 MIR520F MIR524 CACNG7 LENG1 MIR518F MIR519A2 MIR521-1 MIR520C ZNF677 ZNF525 MIR518C MIR518B MIR522 MIR371A MIR520E MYADM CNOT3 MIR516A2 MIR515-1 MIR519A1 BIRC8 ZNF665 LOC284379 ZNF818P MIR523 CACNG8 MIR526A2 PRPF31 MIR520H MIR935 TPM3P9 ZNF845 MIR519B MIR512-2 MIR519D MIR512-1 ZNF761 LILRA5 MIR517B LILRB5 MIR519C MIR1323 MIR517A MIR527 TFPT TARM1 VN1R2 MIR520A MIR518D MIR372 MIR515-2 MIR520D LILRB3 OSCAR MIR520B MIR518E MIR1283-1 LOC105372457 TSEN34 MIR498 NDUFA3 MIR526B ZNF331 TMC4 MIR4752 LILRB2 MIR521-2
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT TARM1 VSTM1 NDUFA3 CACNG8 PRPF31 OSCAR CACNG6 MIR935

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity