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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217800 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00897691_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK055331.1
AK075352.1 BAC11563.1
AK126927.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 FAM132A SDF4 B3GALT6
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100288175 MIR1302-2 ATAD3A MMP23B C1orf159 TMEM88B LOC102724312 LOC105378948 TTLL10-AS1 LOC100506504 ISG15 AURKAIP1 LOC100288069 LOC100132287 LOC100130417 SLC35E2 FNDC10 FAM138A LOC105378591 MIR429 LOC105378592 KLHL17 TAS1R3 FAM87B OR4F29 LINC00115 MIR6859-1 PERM1 MORN1 GABRD LOC100134822 MIR6726 B3GALT6 LOC101928626 WASH7P CCNL2 LOC107985728 CFAP74 DDX11L1 SKI VWA1 MXRA8 CDK11B SAMD11 LINC01342 ACAP3 HES4 DVL1 FAM132A LOC284600 LOC105378949 PLEKHN1 MTND1P23 NOC2L ATAD3C MTND2P28 SDF4 TNFRSF4 MIR6859-2 TNFRSF18 FAM41C LOC729737 GNB1 ANKRD65 MMP23A UBE2J2 OR4F5 NADK MIR6727 CPTP FAAP20 MIR6723 PUSL1 RNF223 LOC100287934 SLC35E2B LOC102725121 MIB2 MIR200A OR4F16 CDK11A ATAD3B LOC107985729 MIR6808 MIR200B LOC100129534 TMEM52 SCNN1D SSU72 TTLL10 CPSF3L PRKCZ CALML6 LOC148413 LOC100133331 LOC105378589 MRPL20 LINC01128 AGRN LOC107984841 TMEM240 LOC105378947
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF18 LINC01342 SCNN1D FAM132A TTLL10 C1orf159 RNF223 MIR429 LOC105378948 TTLL10-AS1 UBE2J2 MIR200A SDF4 TNFRSF4 B3GALT6 MIR200B
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MXRA8 LINC01342 ACAP3 DVL1 FAM132A C1orf159 PUSL1 RNF223 TTLL10-AS1 MIR200A MIR6726 SDF4 TNFRSF4 MIR6808 B3GALT6 MIR200B AURKAIP1 TNFRSF18 SCNN1D TTLL10 CPSF3L MIR429 UBE2J2 MIR6727 TAS1R3 CPTP
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 TTLL10 SDF4 TNFRSF4 B3GALT6
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 LINC01342 ACAP3 FAM132A C1orf159 PUSL1 RNF223 LOC105378948 TTLL10-AS1 MIR200A MIR6726 SDF4 TNFRSF4 B3GALT6 MIR200B TNFRSF18 SCNN1D TTLL10 CPSF3L MIR429 UBE2J2 MIR6727 TAS1R3 AGRN CPTP
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC100288175 SAMD11 LINC01342 HES4 C1orf159 PERM1 RNF223 LOC284600 PLEKHN1 NOC2L LOC105378948 TTLL10-AS1 MIR200A SDF4 TNFRSF4 ISG15 MIR200B TNFRSF18 FAM41C LOC100130417 TTLL10 LOC107985728 MIR429 KLHL17 AGRN
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss VWA1 MXRA8 CDK11B LOC100288175 SAMD11 LINC01342 ATAD3A ACAP3 MMP23B HES4 DVL1 FAM132A C1orf159 TMEM88B LOC284600 PLEKHN1 LOC102724312 NOC2L LOC105378948 TTLL10-AS1 ATAD3C SDF4 TNFRSF4 ISG15 AURKAIP1 TNFRSF18 LOC100288069 FAM41C LOC100130417 SLC35E2 FNDC10 MIR429 ANKRD65 MMP23A UBE2J2 NADK MIR6727 KLHL17 TAS1R3 CPTP FAM87B LINC00115 PERM1 PUSL1 RNF223 LOC100287934 SLC35E2B MIB2 MIR200A MIR6726 CDK11A ATAD3B LOC107985729 MIR6808 B3GALT6 MIR200B SCNN1D SSU72 TTLL10 CCNL2 LOC107985728 CPSF3L LOC148413 MRPL20 LINC01128 AGRN TMEM240
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion VWA1 MXRA8 CDK11B LINC01342 ATAD3A ACAP3 MMP23B DVL1 FAM132A C1orf159 TMEM88B PUSL1 LOC102724312 TTLL10-AS1 ATAD3C MIB2 MIR200A MIR6726 SDF4 ATAD3B TNFRSF4 LOC107985729 MIR6808 B3GALT6 MIR200B AURKAIP1 TNFRSF18 SCNN1D SSU72 FNDC10 TTLL10 CCNL2 CPSF3L MIR429 ANKRD65 LOC148413 UBE2J2 MRPL20 MIR6727 TAS1R3 TMEM240 CPTP
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM87B LOC100288175 SAMD11 LINC01342 HES4 FAM132A LINC00115 C1orf159 PERM1 RNF223 LOC284600 PLEKHN1 NOC2L LOC105378948 TTLL10-AS1 MIR200A SDF4 TNFRSF4 ISG15 B3GALT6 MIR200B TNFRSF18 FAM41C LOC100130417 TTLL10 LOC107985728 MIR429 UBE2J2 LINC01128 KLHL17 AGRN
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TNFRSF18 LOC100288175 SAMD11 LINC01342 HES4 TTLL10 C1orf159 PERM1 RNF223 PLEKHN1 MIR429 NOC2L LOC105378948 TTLL10-AS1 MIR200A KLHL17 SDF4 AGRN TNFRSF4 ISG15 MIR200B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MXRA8 LOC100288175 SAMD11 LINC01342 ACAP3 HES4 DVL1 FAM132A C1orf159 PERM1 TMEM88B PUSL1 RNF223 LOC284600 PLEKHN1 NOC2L LOC105378948 TTLL10-AS1 MIR200A MIR6726 SDF4 TNFRSF4 ISG15 MIR6808 B3GALT6 MIR200B AURKAIP1 TNFRSF18 SCNN1D LOC100130417 TTLL10 CCNL2 LOC107985728 CPSF3L MIR429 ANKRD65 LOC148413 UBE2J2 MRPL20 MIR6727 KLHL17 TAS1R3 AGRN CPTP
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF18 SCNN1D ACAP3 FAM132A TTLL10 PUSL1 CPSF3L MIR429 TTLL10-AS1 UBE2J2 MIR200A MIR6726 MIR6727 SDF4 TNFRSF4 B3GALT6 MIR200B

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