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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:943750 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00920253_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain NOC2L ISG15 LOC105378948 LOC284600 PERM1 LOC100288175 AGRN LOC107985728 RNF223 PLEKHN1 SAMD11 HES4 C1orf159 LOC100130417 KLHL17
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR1302-2 LOC105378948 PUSL1 ATAD3C FAM41C LOC100287934 LOC148413 DDX11L1 LOC100133331 CALML6 ATAD3A SLC35E2 LOC101928626 CPSF3L LOC107984841 MIR6723 MTND2P28 FAAP20 MTND1P23 FAM138A LOC100288069 LINC00115 MMP23B LOC105378949 B3GALT6 TAS1R3 MIR6859-1 MIR200B PLEKHN1 SAMD11 CDK11B OR4F29 NOC2L FNDC10 ATAD3B LOC105378947 MIR429 LINC01128 LOC100129534 MRPL20 AGRN LOC107985728 UBE2J2 MIR6726 OR4F16 LOC102724312 LOC100506504 TNFRSF4 TMEM240 LOC105378592 CDK11A AURKAIP1 CCNL2 MIR6727 MIB2 CFAP74 HES4 VWA1 DVL1 SCNN1D SSU72 ACAP3 LOC100288175 FAM132A SLC35E2B LOC102725121 KLHL17 WASH7P GABRD GNB1 LOC284600 NADK LOC105378591 OR4F5 SDF4 CPTP LOC107985729 LOC100134822 TNFRSF18 MIR6808 ANKRD65 TTLL10-AS1 LINC01342 MMP23A LOC105378589 LOC729737 MIR200A TTLL10 LOC100132287 TMEM52 ISG15 MXRA8 PERM1 MORN1 SKI MIR6859-2 TMEM88B RNF223 FAM87B C1orf159 LOC100130417 PRKCZ
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion NOC2L ISG15 LOC105378948 LOC284600 PERM1 LOC100288175 AGRN LOC107985728 RNF223 PLEKHN1 SAMD11 HES4 C1orf159 LOC100130417 KLHL17
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC107985728 NOC2L LOC284600 PLEKHN1 PERM1 SAMD11 LOC100130417 KLHL17
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain NOC2L TNFRSF18 LOC105378948 MIR429 FAM41C TTLL10-AS1 LINC01342 LOC100288175 AGRN LOC107985728 MIR200A KLHL17 TTLL10 ISG15 TNFRSF4 LOC284600 PERM1 MIR200B RNF223 PLEKHN1 SDF4 SAMD11 HES4 C1orf159 LOC100130417
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SCNN1D LOC105378948 SSU72 PUSL1 ATAD3C FAM41C ACAP3 LOC100287934 LOC148413 LOC100288175 FAM132A ATAD3A SLC35E2 SLC35E2B CPSF3L KLHL17 LOC284600 NADK LOC100288069 LINC00115 MMP23B B3GALT6 TAS1R3 MIR200B PLEKHN1 SDF4 SAMD11 CPTP LOC107985729 CDK11B NOC2L TNFRSF18 MIR6808 FNDC10 ATAD3B MIR429 LINC01128 ANKRD65 MRPL20 TTLL10-AS1 LINC01342 MMP23A AGRN LOC107985728 UBE2J2 MIR6726 MIR200A TTLL10 LOC102724312 ISG15 TNFRSF4 MXRA8 TMEM240 PERM1 CDK11A AURKAIP1 CCNL2 MIR6727 TMEM88B RNF223 FAM87B MIB2 HES4 C1orf159 LOC100130417 VWA1 DVL1
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain NOC2L LOC105378948 LOC105378947 LINC01128 FAM41C LOC100287934 LOC100133331 LOC100288175 AGRN LOC107985728 LOC101928626 KLHL17 OR4F16 ISG15 LOC107984841 MIR6723 MTND2P28 LOC284600 PERM1 MTND1P23 LOC100288069 LINC00115 RNF223 FAM87B PLEKHN1 SAMD11 HES4 C1orf159 LOC100130417
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L TNFRSF18 LOC105378948 MIR429 LINC01128 FAM41C TTLL10-AS1 LINC01342 LOC100288175 AGRN LOC107985728 FAM132A UBE2J2 MIR200A KLHL17 TTLL10 ISG15 TNFRSF4 LOC284600 PERM1 LINC00115 B3GALT6 MIR200B RNF223 FAM87B PLEKHN1 SDF4 SAMD11 HES4 C1orf159 LOC100130417
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain NOC2L ISG15 LOC105378948 PERM1 LINC01342 LOC100288175 AGRN RNF223 PLEKHN1 SAMD11 HES4 C1orf159 KLHL17
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion NOC2L ISG15 TNFRSF4 TNFRSF18 LOC105378948 MIR429 PERM1 TTLL10-AS1 LINC01342 LOC100288175 AGRN MIR200B RNF223 PLEKHN1 SDF4 SAMD11 HES4 C1orf159 MIR200A KLHL17 TTLL10
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN LOC107985728 NOC2L ISG15 LOC284600 PLEKHN1 PERM1 SAMD11 HES4 LOC100130417 KLHL17
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain NOC2L TNFRSF18 SCNN1D MIR6808 LOC105378948 MIR429 PUSL1 ANKRD65 ACAP3 MRPL20 LOC148413 TTLL10-AS1 LINC01342 LOC100288175 AGRN LOC107985728 FAM132A CPSF3L UBE2J2 MIR6726 MIR200A KLHL17 TTLL10 ISG15 TNFRSF4 MXRA8 LOC284600 PERM1 B3GALT6 AURKAIP1 CCNL2 MIR6727 TAS1R3 TMEM88B MIR200B RNF223 PLEKHN1 SDF4 SAMD11 CPTP HES4 C1orf159 LOC100130417 DVL1
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC107985728 NOC2L LOC284600 PLEKHN1 PERM1 LINC01128 SAMD11 FAM41C HES4 LOC100130417 KLHL17

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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