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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:943750 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00920253_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain KLHL17 AGRN C1orf159 LOC100288175 LOC107985728 RNF223 PLEKHN1 HES4 PERM1 LOC284600 ISG15 SAMD11 LOC100130417 LOC105378948 NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378591 OR4F16 DDX11L1 NADK TMEM52 UBE2J2 ATAD3A FNDC10 LOC105378947 OR4F29 ISG15 WASH7P MMP23A CCNL2 LINC01342 TTLL10 NOC2L LINC00115 LOC100132287 MXRA8 C1orf159 PRKCZ B3GALT6 MIR6723 MRPL20 GNB1 AURKAIP1 MIR200A LOC148413 MIR6859-1 LOC105378589 LOC100287934 MIR429 LOC100129534 FAM132A RNF223 ANKRD65 MIR6859-2 GABRD ACAP3 SAMD11 CPSF3L MIR1302-2 LOC100134822 PLEKHN1 CFAP74 MIR6808 SDF4 SSU72 TAS1R3 FAM138A SLC35E2 MIR6727 MIR200B AGRN ATAD3C ATAD3B LOC729737 HES4 LOC105378592 PERM1 LOC100133331 VWA1 MTND2P28 MORN1 MIB2 FAM87B LOC105378949 TMEM240 SLC35E2B LOC100506504 LOC107985729 LOC284600 CDK11A TNFRSF18 PUSL1 MTND1P23 LOC102725121 LOC102724312 FAM41C LOC100288175 CPTP LOC101928626 MIR6726 LINC01128 DVL1 OR4F5 LOC105378948 SCNN1D SKI KLHL17 MMP23B TTLL10-AS1 LOC107985728 CDK11B LOC100288069 LOC107984841 TMEM88B TNFRSF4 CALML6 LOC100130417 FAAP20
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion KLHL17 AGRN C1orf159 LOC100288175 LOC107985728 RNF223 PLEKHN1 HES4 PERM1 LOC284600 ISG15 SAMD11 LOC100130417 LOC105378948 NOC2L
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PERM1 LOC284600 KLHL17 SAMD11 LOC107985728 LOC100130417 PLEKHN1 NOC2L
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain AGRN LOC100288175 RNF223 HES4 PERM1 ISG15 SAMD11 LINC01342 TTLL10 LOC105378948 NOC2L KLHL17 C1orf159 TTLL10-AS1 LOC107985728 PLEKHN1 TNFRSF4 SDF4 LOC284600 TNFRSF18 MIR200A LOC100130417 FAM41C MIR200B MIR429
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain AGRN OR4F16 LOC100288175 RNF223 LOC101928626 HES4 LINC01128 PERM1 LOC105378947 LOC100133331 ISG15 SAMD11 LOC105378948 NOC2L MTND2P28 LINC00115 KLHL17 FAM87B C1orf159 LOC107985728 PLEKHN1 LOC100288069 LOC107984841 MIR6723 LOC284600 LOC100130417 MTND1P23 LOC100287934 FAM41C
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss AGRN ATAD3C NADK ATAD3B UBE2J2 HES4 ATAD3A PERM1 FNDC10 ISG15 MMP23A CCNL2 LINC01342 VWA1 TTLL10 NOC2L MIB2 LINC00115 FAM87B MXRA8 C1orf159 TMEM240 B3GALT6 SLC35E2B MRPL20 AURKAIP1 LOC107985729 LOC284600 CDK11A TNFRSF18 MIR200A LOC148413 PUSL1 LOC102724312 LOC100287934 FAM41C MIR429 LOC100288175 CPTP FAM132A RNF223 MIR6726 ANKRD65 LINC01128 DVL1 ACAP3 SAMD11 LOC105378948 SCNN1D CPSF3L KLHL17 MMP23B TTLL10-AS1 LOC107985728 CDK11B PLEKHN1 LOC100288069 MIR6808 TMEM88B TNFRSF4 SDF4 SSU72 TAS1R3 LOC100130417 SLC35E2 MIR6727 MIR200B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss AGRN LOC100288175 FAM132A RNF223 UBE2J2 HES4 LINC01128 PERM1 ISG15 SAMD11 LINC01342 TTLL10 LOC105378948 NOC2L LINC00115 KLHL17 FAM87B C1orf159 TTLL10-AS1 LOC107985728 PLEKHN1 B3GALT6 TNFRSF4 SDF4 LOC284600 TNFRSF18 MIR200A LOC100130417 FAM41C MIR200B MIR429
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain KLHL17 AGRN C1orf159 LOC100288175 RNF223 PLEKHN1 HES4 PERM1 ISG15 SAMD11 LINC01342 LOC105378948 NOC2L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain AGRN LOC100288175 CPTP FAM132A RNF223 MIR6726 ANKRD65 UBE2J2 HES4 PERM1 DVL1 ISG15 ACAP3 CCNL2 SAMD11 LINC01342 TTLL10 LOC105378948 NOC2L SCNN1D CPSF3L KLHL17 MXRA8 C1orf159 TTLL10-AS1 LOC107985728 PLEKHN1 B3GALT6 MIR6808 TMEM88B MRPL20 AURKAIP1 TNFRSF4 SDF4 LOC284600 TAS1R3 TNFRSF18 MIR200A LOC148413 PUSL1 LOC100130417 MIR6727 MIR200B MIR429
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss PERM1 LOC284600 KLHL17 AGRN ISG15 SAMD11 LOC107985728 LOC100130417 PLEKHN1 NOC2L HES4
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion KLHL17 AGRN C1orf159 LOC100288175 TTLL10-AS1 RNF223 PLEKHN1 HES4 PERM1 TNFRSF4 SDF4 ISG15 TNFRSF18 MIR200A SAMD11 LINC01342 TTLL10 LOC105378948 NOC2L MIR200B MIR429
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain PERM1 LOC284600 KLHL17 SAMD11 LOC107985728 LOC100130417 PLEKHN1 NOC2L FAM41C HES4 LINC01128
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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