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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1228572 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00990744_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 2 551 NP_057260.2
NM_016547.2 2 551 NP_057631.1
XM_011541556.1 2 489 XP_011539858.1
AF132749.1 2 468 AAL75950.1
AF153686.1 2 515 AAD51612.1
AF178986.1 2 515 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 2 485 BAC11563.1
AK222521.1 2 469 BAD96241.1
AK223079.1 2 467 BAD96799.1
AK299810.1 2 425
AK315517.1 2 470
BC006211.2 2 432 AAH06211.1
BC007625.1 1 300 AAH07625.1
BC008917.2 2 451 AAH08917.1
BC011244.1 2 405 AAH11244.1
BC022375.1 2 485 AAH22375.1
DC405714.1
L79912.1 1 230 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF4 MIR200A TTLL10 UBE2J2 TAS1R3 LOC100288175 SDF4 B3GALT6 MIR429 TNFRSF18 MIR200B AGRN FAM132A CPSF3L CPTP C1orf159 MIR6726 RNF223 SCNN1D LINC01342 TTLL10-AS1 ACAP3 MIR6727 LOC105378948 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR6808 SLC35E2 PLEKHN1 MIR200A FAM87B CDK11A UBE2J2 ISG15 SDF4 LOC102724312 MIR429 LOC148413 TNFRSF18 VWA1 AGRN FAM41C SSU72 TMEM240 AURKAIP1 LOC107985729 ATAD3A CPSF3L C1orf159 MIR6726 SLC35E2B RNF223 LOC107985728 SCNN1D CDK11B LINC01342 ACAP3 PERM1 LOC105378948 MRPL20 PUSL1 SAMD11 NOC2L DVL1 KLHL17 TNFRSF4 LOC284600 MMP23A TTLL10 MMP23B TAS1R3 LOC100288175 B3GALT6 MIR200B FAM132A ATAD3C CCNL2 NADK LOC100130417 TMEM88B CPTP FNDC10 LINC01128 HES4 TTLL10-AS1 MIB2 LINC00115 ANKRD65 MIR6727 LOC100287934 ATAD3B MXRA8 LOC100288069
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 SDF4 B3GALT6 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR6808 PLEKHN1 MIR1302-2 LOC105378949 FAM87B UBE2J2 LOC100133331 ISG15 SDF4 LOC148413 TNFRSF18 AGRN FAM41C SSU72 LOC100132287 GABRD MIR6859-2 LOC105378591 LOC102725121 OR4F29 SLC35E2B LOC100129534 RNF223 SCNN1D CDK11B LINC01342 ACAP3 LOC105378948 SAMD11 DVL1 LOC100134822 TNFRSF4 LOC284600 MMP23A TTLL10 TAS1R3 CFAP74 LOC100506504 MIR200B FAM138A TMEM52 PRKCZ ATAD3C LOC100130417 TMEM88B CPTP LOC105378592 MIB2 LINC00115 WASH7P MIR6723 LOC100287934 ATAD3B CALML6 MXRA8 LOC100288069 SLC35E2 MIR200A CDK11A LOC102724312 LOC105378589 MIR429 VWA1 TMEM240 AURKAIP1 LOC729737 LOC107985729 ATAD3A CPSF3L C1orf159 MIR6726 LOC107985728 OR4F16 OR4F5 LOC105378947 PERM1 MRPL20 MORN1 PUSL1 NOC2L MTND2P28 KLHL17 GNB1 MMP23B LOC100288175 LOC101928626 B3GALT6 FAM132A CCNL2 MIR6859-1 MTND1P23 NADK DDX11L1 FNDC10 LINC01128 FAAP20 HES4 SKI TTLL10-AS1 ANKRD65 MIR6727 LOC107984841
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 TNFRSF4 MIR200A TTLL10 UBE2J2 MMP23B TAS1R3 SDF4 LOC102724312 B3GALT6 MIR429 LOC148413 TNFRSF18 MIR200B VWA1 SSU72 FAM132A TMEM240 AURKAIP1 LOC107985729 ATAD3C CCNL2 ATAD3A CPSF3L TMEM88B CPTP C1orf159 MIR6726 FNDC10 SCNN1D CDK11B LINC01342 TTLL10-AS1 MIB2 ACAP3 ANKRD65 MIR6727 MRPL20 PUSL1 ATAD3B DVL1 MXRA8
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PLEKHN1 TNFRSF4 MIR200A LOC284600 FAM87B TTLL10 UBE2J2 ISG15 LOC100288175 SDF4 B3GALT6 MIR429 TNFRSF18 MIR200B AGRN FAM41C FAM132A LOC100130417 C1orf159 RNF223 LOC107985728 LINC01128 HES4 LINC01342 TTLL10-AS1 LINC00115 PERM1 LOC105378948 SAMD11 NOC2L KLHL17
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6808 PLEKHN1 TNFRSF4 MIR200A LOC284600 TTLL10 UBE2J2 TAS1R3 ISG15 LOC100288175 SDF4 B3GALT6 MIR429 LOC148413 TNFRSF18 MIR200B AGRN FAM132A AURKAIP1 CCNL2 LOC100130417 CPSF3L TMEM88B CPTP C1orf159 MIR6726 RNF223 LOC107985728 SCNN1D HES4 LINC01342 TTLL10-AS1 ACAP3 ANKRD65 PERM1 MIR6727 LOC105378948 MRPL20 PUSL1 SAMD11 NOC2L DVL1 MXRA8 KLHL17
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain C1orf159 TNFRSF4 RNF223 SCNN1D MIR200A LINC01342 TTLL10-AS1 TTLL10 UBE2J2 SDF4 LOC105378948 B3GALT6 MIR429 TNFRSF18 MIR200B FAM132A
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6808 TNFRSF4 MIR200A TTLL10 UBE2J2 TAS1R3 SDF4 B3GALT6 MIR429 TNFRSF18 MIR200B FAM132A AURKAIP1 CPSF3L CPTP C1orf159 MIR6726 RNF223 SCNN1D LINC01342 TTLL10-AS1 ACAP3 MIR6727 PUSL1 DVL1 MXRA8
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 SDF4 TNFRSF4 B3GALT6 TNFRSF18 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L TNFRSF4 MIR6726 SCNN1D MIR200A TTLL10-AS1 ACAP3 TTLL10 UBE2J2 MIR6727 SDF4 B3GALT6 MIR429 TNFRSF18 PUSL1 MIR200B FAM132A

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