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Gene Symbol
MEGF6
Assay Reference Genome
Location

Chr.1:3488202 on build GRCh38
Cytoband
1p36.32
Assay ID Hs01032166_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1953

Gene Name:

 multiple EGF like domains 6

Gene Aliases:

 EGFL3

Location:

 Chr.1:3487942-3624757 on Build GRCh38

Assay Gene Location:

 Within Exon 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MEGF6 NM_001409.3 37 7179 NP_001400.3
XM_006710406.3 34 6814 XP_006710469.1
XM_011540885.1 38 7484 XP_011539187.1
XM_011540886.1 37 7355 XP_011539188.1
XM_011540887.2 33 6692 XP_011539189.1
XM_017000533.1 37 7352 XP_016856022.1
AF086414.1 1 465
BM984873.1 1 272

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2758915 Chr.1:3372374 - 3632289 on Build GRCh38 Gain PRDM16 WRAP73 MEGF6 TPRG1L MIR551A ARHGEF16
nsv470687 Chr.1:3356499 - 3763210 on Build GRCh38 Loss PRDM16 WRAP73 MEGF6 TPRG1L TP73 TP73-AS1 CCDC27 MIR551A ARHGEF16
nsv1012423 Chr.1:3477686 - 4747449 on Build GRCh38 Gain SMIM1 WRAP73 LOC284661 CEP104 AJAP1 TP73 CCDC27 DFFB LINC01134 LRRC47 MEGF6 TPRG1L TP73-AS1 MIR551A LINC01346 C1orf174 ARHGEF16
dgv7n67 Chr.1:3484509 - 3489098 on Build GRCh38 Gain MEGF6
nsv951959 Chr.1:3051037 - 3812036 on Build GRCh38 Deletion SMIM1 WRAP73 TP73 CCDC27 LOC105378604 LINC00982 LRRC47 PRDM16 MIR4251 MEGF6 TPRG1L TP73-AS1 MIR551A ARHGEF16
esv3893545 Chr.1:3460878 - 3512044 on Build GRCh38 Loss MEGF6 ARHGEF16
nsv830203 Chr.1:3446374 - 3607752 on Build GRCh38 Loss MEGF6 MIR551A ARHGEF16
nsv545124 Chr.1:3451579 - 3488732 on Build GRCh38 Loss MEGF6 ARHGEF16
nsv299 Chr.1:3476928 - 3512705 on Build GRCh38 Insertion MEGF6 ARHGEF16

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More Information


Additional Information:

For this assay, SNP(s) [rs140094957] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix protein

Gene Ontology Categories:

Function(s) Process(es)


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