Hs01032829_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54051463 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT VSTM1 PRPF31 NDUFA3 TARM1 OSCAR
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 VSTM1 CACNG8 TARM1 CACNG6
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 TARM1 OSCAR
nsv435707	Chr.19:54050726 - 54058212 on Build GRCh38	Deletion	VSTM1
nsv1071550	Chr.19:54050645 - 54057446 on Build GRCh38	Deletion	VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 VSTM1 CACNG7 CACNG8 CACNG6
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR519A2 MIR520E NDUFA3 TPM3P9 MIR372 LOC284379 MIR518F MIR515-2 MIR1283-2 MIR512-1 MIR498 RPS9 DPRX CNOT3 MIR516A2 MIR517C MIR520H MIR520G MIR523 TMC4 MIR519A1 MIR520B ZNF845 VSTM1 MIR521-1 ZNF761 MIR518C MIR520F ZNF677 MIR516B1 OSCAR VN1R2 MIR518A2 TFPT MIR935 ZNF665 PRPF31 LILRA6 MIR516A1 MIR518A1 ZNF765 MIR516B2 MIR371A LILRB5 MIR522 MIR512-2 ZNF525 CACNG7 LOC105372457 PRKCG MIR4752 MBOAT7 TSEN34 MIR1283-1 LILRA5 MIR521-2 CACNG6 MIR371B FAM90A27P MIR524 LILRB2 ZNF813 LILRB3 MIR517A MIR518E MIR515-1 CACNG8 BIRC8 MYADM MIR519C MIR1323 NLRP12 MIR520A MIR519E MIR519D MIR373 MIR518D VN1R4 ZNF818P MIR526A2 MIR518B MIR527 MIR525 MIR520D MIR526A1 MIR517B LENG1 MIR519B MIR526B ZNF331 TARM1 MIR520C
esv2552009	Chr.19:54051426 - 54057890 on Build GRCh38	Deletion	VSTM1
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT MIR935 VSTM1 PRPF31 NDUFA3 CACNG8 TARM1 OSCAR CACNG6

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity