Hs01032829_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54051463 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6 TARM1 MIR935
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 OSCAR PRPF31 NDUFA3 TFPT TARM1
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 OSCAR TARM1
nsv435707	Chr.19:54050726 - 54058212 on Build GRCh38	Deletion	VSTM1
nsv1071550	Chr.19:54050645 - 54057446 on Build GRCh38	Deletion	VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG7 CACNG6 MIR935
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR518D MIR371A DPRX LILRA6 MIR371B CACNG6 BIRC8 MIR1323 MIR1283-2 MIR373 MIR517A MIR520G ZNF331 LOC284379 VSTM1 LENG1 MIR512-1 MIR518F MIR521-1 PRKCG NDUFA3 MIR526A2 LILRB3 MIR517B MIR525 MIR519A2 TARM1 TSEN34 MIR520C MYADM LILRB2 ZNF818P CNOT3 MIR527 MIR520F MIR526A1 ZNF813 MIR524 MIR372 MIR516A2 PRPF31 MIR519D TFPT MIR520A VN1R4 MIR521-2 TMC4 NLRP12 OSCAR MIR1283-1 MIR512-2 MIR523 ZNF665 ZNF761 MIR516B2 RPS9 MIR515-1 MIR515-2 MBOAT7 MIR520H ZNF845 CACNG8 MIR4752 LILRA5 MIR518A1 MIR498 LILRB5 MIR518E MIR519B MIR520E MIR518C FAM90A27P MIR522 ZNF525 ZNF677 MIR516B1 MIR517C ZNF765 VN1R2 CACNG7 MIR519C MIR518B TPM3P9 LOC105372457 MIR519E MIR520D MIR516A1 MIR520B MIR526B MIR518A2 MIR519A1 MIR935
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
esv2552009	Chr.19:54051426 - 54057890 on Build GRCh38	Deletion	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	VSTM1 OSCAR CACNG8 PRPF31 NDUFA3 TFPT CACNG6 TARM1 MIR935

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity