Hs01126099_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1313521 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Overlaps Intron 12 - Exon 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1			NP_001243385.1
	NM_001256460.1			NP_001243389.1
	NM_001256462.1			NP_001243391.1
	NM_001256463.1			NP_001243392.1
	NM_017871.5			NP_060341.2
	XM_011541647.1			XP_011539949.1
	XM_011541648.1			XP_011539950.1
	XM_011541650.1			XP_011539952.1
	XM_017001557.1			XP_016857046.1
	XM_017001558.1			XP_016857047.1
	AK000549.1			BAA91246.1
	AK021939.1			BAB13943.1
	AK023356.1			BAB14541.1
	AK056652.1
	AK058018.1
	AK092190.1
	AK123641.1	2	1511
	AK291387.1
	AK297350.1
	AL136813.1			CAB66747.1
	BC000675.2			AAH00675.2
	BC007978.2			AAH07978.1
	BC008041.2			AAH08041.1
	BC013904.2			AAH13904.2
	BC020199.1			AAH20199.1
	CR533557.1			CAG38588.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	LOC102725121 OR4F5 AGRN KLHL17 MTND1P23 FAAP20 ACAP3 LOC284600 MIR429 CCNL2 RNF223 FAM132A TTLL10-AS1 MTND2P28 TNFRSF18 SLC35E2B LOC100129534 LOC100134822 ATAD3C LOC101928626 SCNN1D PERM1 LINC01342 SSU72 WASH7P DVL1 CDK11A FAM41C MIR6859-1 PUSL1 MIB2 MRPL20 MORN1 GNB1 TMEM52 LOC107984841 TMEM88B TAS1R3 LINC00115 OR4F16 FAM87B PRKCZ SLC35E2 MIR200B FAM138A CALML6 UBE2J2 TTLL10 ISG15 SKI LOC105378949 CPTP LOC105378589 HES4 LOC100133331 MXRA8 NADK LOC100506504 TNFRSF4 LINC01128 NOC2L MIR6808 FNDC10 LOC105378592 MIR6859-2 MIR6723 MIR1302-2 ANKRD65 DDX11L1 LOC729737 LOC102724312 TMEM240 LOC107985728 LOC100288069 SAMD11 VWA1 MMP23B LOC100287934 AURKAIP1 OR4F29 B3GALT6 MIR6726 LOC105378948 LOC107985729 GABRD LOC148413 MIR6727 SDF4 ATAD3A LOC100132287 LOC100130417 PLEKHN1 LOC100288175 C1orf159 CFAP74 CPSF3L LOC105378591 ATAD3B LOC105378947 CDK11B MMP23A MIR200A
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	PUSL1 ACAP3 MIR6727 DVL1 MIR6726 CPTP CPSF3L MIR6808 TAS1R3
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	PUSL1 AURKAIP1 ACAP3 MIR6727 DVL1 MIR6726 CPTP SCNN1D CPSF3L MIR6808 MXRA8 TAS1R3
nsv997291	Chr.1:1306835 - 1376336 on Build GRCh38	Gain	PUSL1 AURKAIP1 ACAP3 MIR6727 DVL1 CPTP CPSF3L MIR6808 MXRA8 TAS1R3
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	LINC01342 AURKAIP1 DVL1 B3GALT6 MIR6726 CPTP MXRA8 PUSL1 ACAP3 MIR6727 MIR429 TNFRSF4 RNF223 FAM132A MIR6808 SDF4 TAS1R3 TTLL10-AS1 TNFRSF18 C1orf159 CPSF3L MIR200B SCNN1D UBE2J2 TTLL10 MIR200A
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	PUSL1 ACAP3 MIR6727 DVL1 CPTP CPSF3L MIR6808 MXRA8 TAS1R3
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	PUSL1 AURKAIP1 ACAP3 MIR6727 DVL1 MIR6726 CPTP SCNN1D CPSF3L MIR6808 MXRA8 TAS1R3
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	LINC01342 B3GALT6 MIR6726 CPTP LOC105378948 AGRN PUSL1 ACAP3 MIR6727 MIR429 TNFRSF4 RNF223 FAM132A SDF4 TAS1R3 TTLL10-AS1 TNFRSF18 LOC100288175 C1orf159 CPSF3L MIR200B SCNN1D UBE2J2 TTLL10 MIR200A
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	CPTP AGRN KLHL17 HES4 MXRA8 NADK ACAP3 LOC284600 MIR429 TNFRSF4 LINC01128 CCNL2 RNF223 NOC2L FAM132A MIR6808 FNDC10 TTLL10-AS1 TNFRSF18 SLC35E2B ANKRD65 LOC102724312 TMEM240 LOC107985728 LOC100288069 ATAD3C SAMD11 SCNN1D VWA1 PERM1 MMP23B LOC100287934 LINC01342 AURKAIP1 SSU72 DVL1 B3GALT6 MIR6726 LOC105378948 CDK11A FAM41C LOC107985729 PUSL1 LOC148413 MIB2 MIR6727 MRPL20 SDF4 TMEM88B TAS1R3 ATAD3A LINC00115 LOC100130417 PLEKHN1 LOC100288175 C1orf159 FAM87B CPSF3L SLC35E2 ATAD3B MIR200B CDK11B UBE2J2 MMP23A TTLL10 MIR200A ISG15
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	PUSL1 ACAP3 MIR6727 DVL1 CPTP CPSF3L MIR6808 MXRA8 TAS1R3
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	PUSL1 ACAP3 MIR6727 DVL1 MIR6726 CPTP SCNN1D CPSF3L MIR6808 MXRA8 TAS1R3
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	LINC01342 AURKAIP1 SSU72 DVL1 B3GALT6 MIR6726 CPTP MXRA8 LOC107985729 PUSL1 LOC148413 MIB2 ACAP3 MIR6727 MIR429 TNFRSF4 CCNL2 MRPL20 FAM132A MIR6808 SDF4 FNDC10 TMEM88B TAS1R3 TTLL10-AS1 ATAD3A TNFRSF18 ANKRD65 C1orf159 CPSF3L LOC102724312 TMEM240 ATAD3C ATAD3B MIR200B CDK11B SCNN1D UBE2J2 VWA1 TTLL10 MMP23B MIR200A
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	AURKAIP1 DVL1 MIR6726 CPTP CPSF3L MXRA8 PUSL1 ACAP3 MIR6727 SCNN1D UBE2J2 MIR6808 TAS1R3
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	LINC01342 AURKAIP1 DVL1 B3GALT6 MIR6726 CPTP LOC105378948 AGRN KLHL17 HES4 MXRA8 PUSL1 LOC148413 ACAP3 MIR6727 LOC284600 MIR429 TNFRSF4 CCNL2 RNF223 MRPL20 NOC2L FAM132A MIR6808 SDF4 TMEM88B TAS1R3 TTLL10-AS1 TNFRSF18 LOC100130417 PLEKHN1 LOC100288175 ANKRD65 C1orf159 CPSF3L LOC107985728 SAMD11 MIR200B SCNN1D UBE2J2 PERM1 TTLL10 MIR200A ISG15
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	TTLL10-AS1 TNFRSF18 B3GALT6 MIR6726 CPSF3L PUSL1 MIR200B ACAP3 MIR6727 MIR429 TNFRSF4 SCNN1D UBE2J2 FAM132A TTLL10 MIR200A SDF4

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity