Hs01230592_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1311824 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Within Exon 19

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1	19	2390	NP_001243385.1
	NM_001256460.1	18	2024	NP_001243389.1
	NM_001256462.1	15	1623	NP_001243391.1
	NM_001256463.1	15	1614	NP_001243392.1
	NM_017871.5	17	1917	NP_060341.2
	XM_011541647.1	19	2068	XP_011539949.1
	XM_011541648.1	19	2072	XP_011539950.1
	XM_011541650.1	17	1797	XP_011539952.1
	XM_017001557.1	18	1873	XP_016857046.1
	XM_017001558.1	19	1927	XP_016857047.1
	AA687684.1	1	252
	AK000549.1	9	1061	BAA91246.1
	AK021939.1	15	1580	BAB13943.1
	AK023356.1			BAB14541.1
	AK056652.1	19	2312
	AK058018.1	15	1589
	AK092190.1	14	1650
	AK123641.1	6	2861
	AK291387.1	19	2353
	AK297350.1
	AL136813.1	17	1896	CAB66747.1
	BC000675.2	14	1457	AAH00675.2
	BC007978.2	17	1879	AAH07978.1
	BC008041.2	12	1241	AAH08041.1
	BC013904.2	13	1326	AAH13904.2
	BC020199.1	12	1241	AAH20199.1
	CR533557.1			CAG38588.1
	KF274554.1	3	314

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	RNF223 LOC100506504 MIR6727 LOC100133331 KLHL17 LOC100287934 PUSL1 MORN1 LOC100134822 MIR429 ATAD3B LOC102724312 TMEM240 AURKAIP1 MIR200B SAMD11 ACAP3 CFAP74 PERM1 LOC100130417 LOC100288069 SLC35E2 LOC100132287 MIR200A MIR6723 LINC01342 MIR6859-2 LOC107985729 GNB1 CCNL2 ATAD3C MTND1P23 UBE2J2 CDK11B SLC35E2B FAM138A LOC101928626 PRKCZ LOC107984841 FAM132A LINC00115 PLEKHN1 TMEM88B LOC105378591 SCNN1D C1orf159 LOC102725121 TTLL10-AS1 LOC105378948 TMEM52 LOC105378949 CALML6 CPTP FAM41C MMP23A LOC105378592 LINC01128 OR4F29 GABRD NOC2L OR4F5 TTLL10 LOC105378947 MIR6808 DVL1 SDF4 LOC100288175 ANKRD65 TNFRSF4 AGRN MIR1302-2 SSU72 LOC729737 FNDC10 ISG15 DDX11L1 MIB2 TAS1R3 TNFRSF18 ATAD3A CDK11A MRPL20 NADK HES4 SKI WASH7P LOC284600 CPSF3L MTND2P28 FAAP20 FAM87B OR4F16 LOC100129534 LOC148413 VWA1 MIR6859-1 MXRA8 B3GALT6 MIR6726 LOC107985728 LOC105378589 MMP23B
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	CPTP DVL1 CPSF3L PUSL1 MIR6727 MIR6808 TAS1R3 MIR6726 ACAP3
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	CPTP DVL1 AURKAIP1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 SCNN1D MIR6726 ACAP3
nsv997291	Chr.1:1306835 - 1376336 on Build GRCh38	Gain	CPTP DVL1 AURKAIP1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 ACAP3
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	TTLL10-AS1 RNF223 UBE2J2 MIR6727 TAS1R3 TNFRSF18 CPTP PUSL1 MIR429 AURKAIP1 CPSF3L FAM132A MIR200B TTLL10 MIR6808 ACAP3 DVL1 SDF4 MIR200A MXRA8 TNFRSF4 B3GALT6 LINC01342 SCNN1D MIR6726 C1orf159
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	CPTP DVL1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 ACAP3
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	CPTP DVL1 AURKAIP1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 SCNN1D MIR6726 ACAP3
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	TTLL10-AS1 LOC105378948 RNF223 UBE2J2 MIR6727 TAS1R3 TNFRSF18 CPTP PUSL1 MIR429 CPSF3L FAM132A MIR200B TTLL10 ACAP3 SDF4 LOC100288175 MIR200A TNFRSF4 B3GALT6 LINC01342 SCNN1D MIR6726 C1orf159 AGRN
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	TTLL10-AS1 LOC105378948 RNF223 MIR6727 KLHL17 LOC100287934 CPTP FAM41C PUSL1 MMP23A MIR429 LINC01128 ATAD3B LOC102724312 TMEM240 AURKAIP1 NOC2L MIR200B TTLL10 MIR6808 SAMD11 ACAP3 PERM1 LOC100130417 DVL1 SDF4 LOC100288175 ANKRD65 LOC100288069 SLC35E2 MIR200A TNFRSF4 LINC01342 LOC107985729 CCNL2 AGRN ATAD3C SSU72 UBE2J2 FNDC10 ISG15 CDK11B MIB2 TAS1R3 TNFRSF18 SLC35E2B ATAD3A CDK11A MRPL20 NADK HES4 LOC284600 CPSF3L FAM132A FAM87B LINC00115 PLEKHN1 LOC148413 TMEM88B VWA1 MXRA8 B3GALT6 SCNN1D MIR6726 C1orf159 LOC107985728 MMP23B
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	CPTP DVL1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 ACAP3
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	CPTP DVL1 CPSF3L PUSL1 MXRA8 MIR6727 MIR6808 TAS1R3 SCNN1D MIR6726 ACAP3
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	ATAD3C TTLL10-AS1 SSU72 UBE2J2 FNDC10 MIR6727 CDK11B MIB2 TAS1R3 TNFRSF18 ATAD3A CPTP PUSL1 MRPL20 MIR429 ATAD3B LOC102724312 TMEM240 AURKAIP1 CPSF3L FAM132A MIR200B TTLL10 MIR6808 ACAP3 DVL1 SDF4 LOC148413 ANKRD65 TMEM88B VWA1 MIR200A MXRA8 TNFRSF4 B3GALT6 LINC01342 SCNN1D LOC107985729 MIR6726 C1orf159 CCNL2 MMP23B
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	AURKAIP1 CPSF3L UBE2J2 MIR6727 MIR6808 TAS1R3 ACAP3 CPTP DVL1 PUSL1 MXRA8 SCNN1D MIR6726
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	TTLL10-AS1 LOC105378948 RNF223 UBE2J2 ISG15 MIR6727 TAS1R3 KLHL17 TNFRSF18 CPTP PUSL1 MRPL20 MIR429 HES4 LOC284600 AURKAIP1 CPSF3L NOC2L FAM132A MIR200B TTLL10 MIR6808 SAMD11 ACAP3 PERM1 LOC100130417 DVL1 PLEKHN1 SDF4 LOC100288175 LOC148413 ANKRD65 TMEM88B MIR200A MXRA8 TNFRSF4 B3GALT6 LINC01342 SCNN1D MIR6726 C1orf159 LOC107985728 CCNL2 AGRN
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	CPSF3L TTLL10-AS1 UBE2J2 FAM132A MIR200B MIR6727 TTLL10 TNFRSF18 ACAP3 SDF4 PUSL1 MIR200A MIR429 TNFRSF4 B3GALT6 SCNN1D MIR6726

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity