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Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1214133 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01481232_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 1 36 NP_003318.1
XM_011542075.2 1 503 XP_011540377.1
XM_017002231.1 2 1381 XP_016857720.1
XM_017002232.1 2 1381 XP_016857721.1
BC105070.1 1 36 AAI05071.1
BC105072.1 1 36 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100287934 SSU72 MRPL20 B3GALT6 ANKRD65 TTLL10 FAAP20 ISG15 NOC2L MIR1302-2 LOC100130417 FAM138A CDK11B MMP23B OR4F29 LOC100288175 MIR6859-1 TMEM88B ATAD3C LOC105378591 GNB1 LOC107985729 LOC284600 LOC105378948 LOC107984841 SAMD11 MIR200A MIR429 KLHL17 MIR200B ATAD3A DVL1 VWA1 MIR6726 CCNL2 LOC100132287 LINC01342 WASH7P DDX11L1 LOC100134822 TTLL10-AS1 LOC101928626 FNDC10 MORN1 LOC105378589 CDK11A TNFRSF18 MTND1P23 SLC35E2 LOC105378592 LOC100506504 UBE2J2 SCNN1D HES4 LOC105378949 TMEM52 LOC102725121 CPSF3L SDF4 SLC35E2B LOC102724312 LOC729737 PLEKHN1 LINC00115 NADK PUSL1 C1orf159 ACAP3 MIB2 LOC100133331 LOC107985728 MIR6727 LOC100288069 CALML6 MIR6859-2 FAM87B AURKAIP1 CPTP FAM132A MIR6808 TAS1R3 FAM41C AGRN TNFRSF4 LINC01128 LOC148413 SKI PRKCZ MIR6723 MMP23A MTND2P28 ATAD3B LOC100129534 MXRA8 OR4F5 PERM1 OR4F16 GABRD RNF223 TMEM240 CFAP74 LOC105378947
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 FAM132A C1orf159 TNFRSF18 SDF4 B3GALT6 TNFRSF4 RNF223 TTLL10 UBE2J2 SCNN1D LOC105378948 LINC01342 MIR200A MIR429 MIR200B
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss FAM132A MIR6808 TAS1R3 DVL1 CPSF3L SDF4 B3GALT6 TNFRSF4 TTLL10 MIR6726 LINC01342 TTLL10-AS1 PUSL1 C1orf159 ACAP3 TNFRSF18 MXRA8 MIR6727 RNF223 UBE2J2 SCNN1D MIR200A AURKAIP1 MIR429 CPTP MIR200B
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TTLL10 TNFRSF18 SDF4 B3GALT6 TNFRSF4
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication FAM132A TAS1R3 AGRN CPSF3L SDF4 B3GALT6 TNFRSF4 TTLL10 MIR6726 LINC01342 LOC100288175 TTLL10-AS1 PUSL1 C1orf159 ACAP3 TNFRSF18 MIR6727 RNF223 UBE2J2 SCNN1D LOC105378948 MIR200A MIR429 CPTP MIR200B
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain FAM41C AGRN SDF4 TNFRSF4 TTLL10 ISG15 NOC2L LOC100130417 LINC01342 PLEKHN1 LOC100288175 TTLL10-AS1 C1orf159 TNFRSF18 LOC107985728 PERM1 RNF223 LOC284600 LOC105378948 SAMD11 HES4 MIR200A MIR429 KLHL17 MIR200B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100287934 SSU72 MRPL20 CPSF3L SDF4 B3GALT6 SLC35E2B ANKRD65 TTLL10 LOC102724312 ISG15 NOC2L LOC100130417 CDK11B MMP23B PLEKHN1 LINC00115 LOC100288175 NADK PUSL1 C1orf159 ACAP3 MIB2 TMEM88B LOC107985728 MIR6727 ATAD3C LOC100288069 LOC107985729 FAM87B LOC284600 LOC105378948 SAMD11 MIR200A AURKAIP1 MIR429 KLHL17 CPTP MIR200B FAM132A ATAD3A MIR6808 TAS1R3 DVL1 FAM41C AGRN TNFRSF4 LINC01128 VWA1 LOC148413 MIR6726 CCNL2 LINC01342 TTLL10-AS1 MMP23A FNDC10 CDK11A TNFRSF18 ATAD3B MXRA8 SLC35E2 PERM1 RNF223 UBE2J2 TMEM240 SCNN1D HES4
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FAM132A ATAD3A MIR6808 TAS1R3 DVL1 SSU72 MRPL20 CPSF3L SDF4 B3GALT6 TNFRSF4 VWA1 LOC148413 ANKRD65 TTLL10 LOC102724312 MIR6726 CCNL2 LINC01342 CDK11B MMP23B TTLL10-AS1 PUSL1 C1orf159 ACAP3 FNDC10 MIB2 TNFRSF18 ATAD3B TMEM88B MXRA8 MIR6727 ATAD3C UBE2J2 TMEM240 LOC107985729 SCNN1D MIR200A AURKAIP1 MIR429 CPTP MIR200B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM132A FAM41C AGRN SDF4 B3GALT6 TNFRSF4 LINC01128 TTLL10 ISG15 NOC2L LOC100130417 LINC01342 PLEKHN1 LINC00115 LOC100288175 TTLL10-AS1 C1orf159 TNFRSF18 LOC107985728 PERM1 RNF223 UBE2J2 FAM87B LOC284600 LOC105378948 SAMD11 HES4 MIR200A MIR429 KLHL17 MIR200B
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TTLL10-AS1 C1orf159 TNFRSF18 AGRN SDF4 TNFRSF4 PERM1 RNF223 TTLL10 ISG15 NOC2L LOC105378948 SAMD11 HES4 LINC01342 MIR200A PLEKHN1 MIR429 KLHL17 LOC100288175 MIR200B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain FAM132A MIR6808 TAS1R3 DVL1 AGRN MRPL20 CPSF3L SDF4 B3GALT6 TNFRSF4 LOC148413 ANKRD65 TTLL10 ISG15 NOC2L MIR6726 CCNL2 LOC100130417 LINC01342 PLEKHN1 LOC100288175 TTLL10-AS1 PUSL1 C1orf159 ACAP3 TNFRSF18 TMEM88B MXRA8 LOC107985728 MIR6727 PERM1 RNF223 UBE2J2 LOC284600 SCNN1D LOC105378948 SAMD11 HES4 MIR200A AURKAIP1 MIR429 KLHL17 CPTP MIR200B
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 PUSL1 FAM132A ACAP3 TNFRSF18 CPSF3L SDF4 B3GALT6 TNFRSF4 MIR6727 TTLL10 UBE2J2 MIR6726 SCNN1D MIR200A MIR429 MIR200B

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