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Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54040897 on build GRCh38
Cytoband
19q13.42
Assay ID Hs01545390_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 9 742 NP_001275720.1
NM_001288792.1 8 858 NP_001275721.1
NM_001288793.1 6 591 NP_001275722.1
NM_198481.3 9 951 NP_940883.2
NR_110142.1 10 1040
XM_011526845.1 10 1348 XP_011525147.1
XM_011526846.1 10 1258 XP_011525148.1
XM_011526847.1 11 1326 XP_011525149.1
XM_011526848.1 9 1165 XP_011525150.1
XM_011526849.1 9 1054 XP_011525151.1
AI457604.1 1 84
AY358542.1 9 960 AAQ88906.1
BC100943.2 8 835 AAI00944.1
BG189223.1 5 390
BQ446114.1 1 82
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion VSTM1 NDUFA3 PRPF31 TARM1 TFPT OSCAR
nsv580110 Chr.19:53961144 - 54093354 on Build GRCh38 Gain MIR935 CACNG8 VSTM1 TARM1 CACNG6
nsv1057516 Chr.19:53986233 - 54046901 on Build GRCh38 Gain CACNG8 VSTM1 CACNG6
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain MIR935 CACNG8 VSTM1 CACNG7 CACNG6
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion NLRP12 MIR516A1 VN1R4 MIR518B CACNG8 VSTM1 MIR520H MIR518A2 MIR516B2 VN1R2 LILRB3 MIR525 LILRB5 MIR1283-1 MIR517B OSCAR BIRC8 CACNG6 MIR521-2 NDUFA3 LENG1 LOC105372457 CACNG7 LILRB2 MIR519A1 MIR518D TARM1 RPS9 MIR520C FAM90A27P MIR524 MIR519D MIR520F MYADM MIR520D LILRA6 MIR371B MIR512-1 MIR518C MIR520E ZNF677 MIR526A1 MIR522 MIR519B MIR515-1 MIR373 TSEN34 MIR4752 MIR1283-2 MIR519A2 ZNF665 MIR935 MIR498 MIR521-1 MIR371A MIR518E MIR372 MIR523 TMC4 LILRA5 LOC284379 MIR526A2 MIR520B MIR516B1 MIR518A1 MIR517A MIR527 MIR515-2 ZNF765 MIR1323 MIR518F ZNF845 TFPT MIR519E CNOT3 ZNF818P PRKCG ZNF525 ZNF813 TPM3P9 MIR512-2 MIR520G ZNF331 MIR520A DPRX MIR517C MBOAT7 PRPF31 MIR519C ZNF761 MIR526B MIR516A2
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss MIR935 CACNG8 VSTM1 NDUFA3 PRPF31 TARM1 TFPT OSCAR CACNG6
nsv820269 Chr.19:54040652 - 54041356 on Build GRCh38 Gain VSTM1

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More Information


Additional Information:

For this assay, SNP(s) [rs200587635,rs369366127] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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