Hs01591205_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54063769 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	PRPF31 NDUFA3 OSCAR VSTM1 TARM1 TFPT
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG6 CACNG8 VSTM1 TARM1
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	OSCAR VSTM1 TARM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG6 CACNG7 CACNG8 VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	FAM90A27P MIR526B MIR519A2 MIR520B LOC105372457 ZNF331 MIR521-2 MIR518B LILRA6 MIR517C VN1R4 MIR515-2 MIR520H MIR373 LILRB2 MIR512-2 ZNF813 ZNF765 ZNF818P MIR518F MIR518C MIR512-1 MIR526A2 MIR519E MIR515-1 MIR518A2 MIR372 LILRB5 MIR520D MIR520A LILRA5 TFPT MIR519D MIR520F TMC4 MIR526A1 MIR935 PRPF31 MIR520E VN1R2 MIR527 MIR520G MIR4752 MIR519B MIR518A1 MIR1283-2 ZNF525 MIR371B MIR524 CACNG6 NDUFA3 MIR498 OSCAR MIR518D CACNG8 VSTM1 ZNF677 MIR516B2 MIR520C RPS9 MIR371A LENG1 LILRB3 MIR519A1 MBOAT7 TSEN34 TARM1 BIRC8 MIR518E MIR516A1 LOC284379 NLRP12 MIR522 CACNG7 PRKCG MIR517B MIR521-1 MIR517A MYADM MIR1283-1 MIR523 MIR516A2 MIR519C MIR525 CNOT3 ZNF761 MIR516B1 ZNF665 TPM3P9 DPRX MIR1323 ZNF845
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 PRPF31 CACNG6 NDUFA3 OSCAR CACNG8 VSTM1 TARM1 TFPT

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity