Hs01604883_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1312855 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1	14	1778	NP_001243385.1
	NM_001256460.1	13	1412	NP_001243389.1
	NM_001256462.1	10	1011	NP_001243391.1
	NM_001256463.1	10	1002	NP_001243392.1
	NM_017871.5	12	1305	NP_060341.2
	XM_011541647.1	14	1456	XP_011539949.1
	XM_011541648.1	14	1460	XP_011539950.1
	XM_011541650.1	12	1185	XP_011539952.1
	XM_017001557.1	13	1261	XP_016857046.1
	XM_017001558.1	14	1315	XP_016857047.1
	AK000549.1	4	449	BAA91246.1
	AK021939.1	10	968	BAB13943.1
	AK023356.1	12	1223	BAB14541.1
	AK056652.1	14	1700
	AK058018.1	10	977
	AK092190.1	9	1038
	AK123641.1	3	2092
	AK291387.1	14	1741
	AK297350.1	13	1362
	AL136813.1	12	1284	CAB66747.1
	BC000675.2	9	845	AAH00675.2
	BC007978.2	12	1267	AAH07978.1
	BC008041.2			AAH08041.1
	BC013904.2	8	714	AAH13904.2
	BC020199.1			AAH20199.1
	CR533557.1	12	1226	CAG38588.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	LOC100134822 AURKAIP1 LOC100287934 MTND2P28 MIR200B HES4 LOC100506504 LOC107984841 LOC729737 MIR200A SCNN1D MIR6726 LOC105378947 SLC35E2 LOC148413 TTLL10-AS1 MIR1302-2 ISG15 MIR6727 TMEM88B TAS1R3 LOC102724312 KLHL17 LOC100132287 LOC284600 ATAD3C B3GALT6 RNF223 LINC01342 LOC107985729 DDX11L1 PLEKHN1 LINC01128 SLC35E2B ATAD3B CDK11B GNB1 CPTP SAMD11 LOC105378948 OR4F16 DVL1 TMEM52 SKI PUSL1 MMP23A MIR6723 CFAP74 NOC2L FAM138A FAAP20 OR4F29 SSU72 ANKRD65 C1orf159 LOC100288175 FNDC10 PERM1 LOC107985728 CDK11A FAM41C LOC105378949 WASH7P ACAP3 LOC100129534 LOC100288069 MIR429 MORN1 MRPL20 SDF4 TTLL10 MMP23B ATAD3A MIR6859-1 MTND1P23 LOC105378589 TNFRSF4 PRKCZ LOC105378592 LOC100130417 MIB2 LOC100133331 MXRA8 AGRN VWA1 LINC00115 LOC101928626 UBE2J2 OR4F5 TMEM240 GABRD FAM132A CPSF3L LOC105378591 MIR6859-2 MIR6808 NADK CALML6 FAM87B CCNL2 TNFRSF18 LOC102725121
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	DVL1 CPTP MIR6726 MIR6808 MIR6727 TAS1R3 PUSL1 ACAP3 CPSF3L
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	SCNN1D DVL1 CPTP MIR6726 MIR6808 MIR6727 MXRA8 TAS1R3 AURKAIP1 PUSL1 ACAP3 CPSF3L
nsv997291	Chr.1:1306835 - 1376336 on Build GRCh38	Gain	DVL1 CPTP MIR6808 MIR6727 MXRA8 TAS1R3 AURKAIP1 PUSL1 ACAP3 CPSF3L
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	SDF4 B3GALT6 AURKAIP1 RNF223 LINC01342 TTLL10 TNFRSF4 MIR200B C1orf159 MIR200A SCNN1D CPTP MIR6726 MXRA8 UBE2J2 TTLL10-AS1 FAM132A CPSF3L DVL1 MIR6808 MIR6727 TAS1R3 PUSL1 ACAP3 TNFRSF18 MIR429
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	DVL1 CPTP MIR6808 MIR6727 MXRA8 TAS1R3 PUSL1 ACAP3 CPSF3L
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	SCNN1D DVL1 CPTP MIR6726 MIR6808 MIR6727 MXRA8 TAS1R3 AURKAIP1 PUSL1 ACAP3 CPSF3L
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	SDF4 B3GALT6 RNF223 LINC01342 TTLL10 TNFRSF4 MIR200B C1orf159 LOC100288175 MIR200A SCNN1D CPTP MIR6726 AGRN LOC105378948 UBE2J2 TTLL10-AS1 FAM132A CPSF3L MIR6727 TAS1R3 PUSL1 ACAP3 TNFRSF18 MIR429
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	AURKAIP1 SSU72 LOC100287934 ANKRD65 MIR200B HES4 C1orf159 LOC100288175 MIR200A SCNN1D FNDC10 PERM1 LOC107985728 MIR6726 CDK11A FAM41C SLC35E2 LOC148413 TTLL10-AS1 ISG15 MIR6727 TMEM88B TAS1R3 LOC102724312 KLHL17 ACAP3 LOC100288069 MIR429 MRPL20 LOC284600 SDF4 ATAD3C B3GALT6 RNF223 LINC01342 TTLL10 MMP23B ATAD3A TNFRSF4 LOC107985729 PLEKHN1 LINC01128 LOC100130417 SLC35E2B ATAD3B MIB2 CDK11B CPTP SAMD11 MXRA8 AGRN VWA1 LINC00115 LOC105378948 UBE2J2 TMEM240 FAM132A CPSF3L DVL1 MIR6808 NADK PUSL1 MMP23A FAM87B CCNL2 NOC2L TNFRSF18
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	DVL1 CPTP MIR6808 MIR6727 MXRA8 TAS1R3 PUSL1 ACAP3 CPSF3L
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	SCNN1D DVL1 CPTP MIR6726 MIR6808 MIR6727 MXRA8 TAS1R3 PUSL1 ACAP3 CPSF3L
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	MRPL20 SDF4 ATAD3C B3GALT6 AURKAIP1 LINC01342 TTLL10 MMP23B ATAD3A SSU72 TNFRSF4 LOC107985729 ANKRD65 MIR200B ATAD3B MIB2 C1orf159 CDK11B MIR200A SCNN1D FNDC10 CPTP MIR6726 MXRA8 VWA1 LOC148413 UBE2J2 TMEM240 TTLL10-AS1 FAM132A CPSF3L DVL1 MIR6808 MIR6727 TMEM88B TAS1R3 LOC102724312 PUSL1 ACAP3 CCNL2 TNFRSF18 MIR429
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	SCNN1D CPTP MIR6726 MXRA8 AURKAIP1 UBE2J2 CPSF3L DVL1 MIR6808 MIR6727 TAS1R3 PUSL1 ACAP3
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	MRPL20 LOC284600 SDF4 B3GALT6 AURKAIP1 RNF223 LINC01342 TTLL10 TNFRSF4 PLEKHN1 ANKRD65 LOC100130417 MIR200B HES4 C1orf159 LOC100288175 MIR200A SCNN1D PERM1 CPTP LOC107985728 MIR6726 SAMD11 MXRA8 AGRN LOC148413 LOC105378948 UBE2J2 TTLL10-AS1 FAM132A CPSF3L DVL1 ISG15 MIR6808 MIR6727 TMEM88B TAS1R3 PUSL1 KLHL17 ACAP3 CCNL2 NOC2L TNFRSF18 MIR429
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	MIR200A SCNN1D MIR6726 SDF4 B3GALT6 TTLL10 UBE2J2 TTLL10-AS1 FAM132A CPSF3L TNFRSF4 MIR6727 PUSL1 ACAP3 MIR200B TNFRSF18 MIR429

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity