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See other CCL20 CNV Assays ›
Gene Symbol
CCL20
Assay Reference Genome
Location

Chr.2:227816371 on build GRCh38
Cytoband
2q36.3
Assay ID Hs01630395_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

6364

Gene Name:

C-C motif chemokine ligand 20

Gene Aliases:

CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A, SCYA20, ST38

Location:

Chr.2:227813842-227817564 on Build GRCh38

Assay Gene Location:

Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCL20 NM_001130046.1 NP_001123518.1
NM_004591.2 NP_004582.1
BC020698.1 AAH20698.1
D86955.1 BAA13191.1
U64197.1 AAB61534.1
U77035.1 AAC50943.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv10221 Chr.2:227715193 - 228041264 on Build GRCh38 Loss CCL20 SPHKAP SLC19A3 DAW1
nsv834562 Chr.2:227752511 - 227939244 on Build GRCh38 Gain CCL20 DAW1

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More Information


Set Membership:

Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cytokine intercellular signal molecule

Gene Ontology Categories:

Function(s) Process(es)

monocyte chemotaxis
chemotaxis
inflammatory response
immune response
signal transduction
G-protein coupled receptor signaling pathway
cell-cell signaling
neutrophil chemotaxis
calcium-mediated signaling using intracellular calcium source
wound healing
defense response to bacterium
positive regulation of GTPase activity
lymphocyte chemotaxis
positive regulation of interleukin-1 alpha biosynthetic process
positive regulation of nitric-oxide synthase biosynthetic process
cell chemotaxis
chemokine-mediated signaling pathway
positive regulation of ERK1 and ERK2 cascade
cellular response to lipopolysaccharide
cellular response to lipoteichoic acid
cellular response to interferon-gamma
cellular response to interleukin-1
cellular response to tumor necrosis factor
T cell migration
thymocyte migration
positive regulation of T cell migration
protein binding
chemokine activity
CCR6 chemokine receptor binding
CCR chemokine receptor binding

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