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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217214 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01638124_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 7 1716 NP_057260.2
NM_016547.2 7 1832 NP_057631.1
AF153686.1 7 1812 AAD51612.1
AF178986.1 7 1796 AAF44350.1
AK000717.1 5 2579
AK027277.1 8 1308 BAB55012.1
AK055331.1 2 2311
AK075352.1 7 1650 BAC11563.1
AK126927.1 3 3234
AK222521.1 7 1634 BAD96241.1
BC006211.2 7 1597 AAH06211.1
BC007625.1 6 1465 AAH07625.1
BC008917.2 7 1616 AAH08917.1
BC011244.1 7 1570 AAH11244.1
BC022375.1 7 1650 AAH22375.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss B3GALT6 FAM132A SDF4 UBE2J2
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ATAD3A ANKRD65 LOC107985728 SKI GNB1 MIB2 LOC729737 LOC148413 PUSL1 MIR6808 WASH7P RNF223 LOC105378589 UBE2J2 PLEKHN1 DDX11L1 LOC105378949 KLHL17 LOC107985729 LOC102724312 TAS1R3 TMEM88B PRKCZ LOC105378947 LOC100129534 MIR200B LOC105378591 DVL1 MIR1302-2 LOC100132287 CPTP MTND2P28 TTLL10-AS1 CDK11A B3GALT6 VWA1 ATAD3C SCNN1D TTLL10 CFAP74 MMP23A ATAD3B MMP23B MIR6859-1 CALML6 C1orf159 FAAP20 LINC01128 MIR6727 SLC35E2 MIR6726 SDF4 LOC100287934 OR4F5 AURKAIP1 FAM132A MORN1 TMEM240 HES4 MRPL20 SLC35E2B LOC100134822 MIR200A NADK TNFRSF4 LINC01342 TMEM52 MXRA8 TNFRSF18 LOC100288069 LOC102725121 LOC100506504 LOC101928626 LOC100288175 FAM87B LOC284600 FAM41C SSU72 FAM138A CDK11B MTND1P23 LOC105378592 CCNL2 NOC2L LOC100130417 MIR6723 ISG15 SAMD11 FNDC10 AGRN GABRD ACAP3 PERM1 LOC105378948 CPSF3L LINC00115 LOC100133331 LOC107984841 OR4F29 OR4F16 MIR6859-2 MIR429
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain B3GALT6 MIR200A MIR200B RNF223 TNFRSF4 LINC01342 SDF4 SCNN1D TTLL10 UBE2J2 TNFRSF18 LOC105378948 FAM132A C1orf159 TTLL10-AS1 MIR429
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6727 TAS1R3 MIR200B MIR6726 SDF4 DVL1 AURKAIP1 CPTP FAM132A PUSL1 MIR6808 TTLL10-AS1 B3GALT6 MIR200A RNF223 TNFRSF4 ACAP3 LINC01342 SCNN1D TTLL10 MXRA8 UBE2J2 TNFRSF18 CPSF3L C1orf159 MIR429
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TNFRSF4 SDF4 TTLL10-AS1 TTLL10 TNFRSF18
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR6727 TAS1R3 MIR200B MIR6726 SDF4 CPTP FAM132A PUSL1 TTLL10-AS1 B3GALT6 AGRN MIR200A RNF223 TNFRSF4 ACAP3 LINC01342 SCNN1D TTLL10 UBE2J2 TNFRSF18 LOC105378948 CPSF3L LOC100288175 C1orf159 MIR429
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain FAM41C LOC107985728 MIR200B SDF4 NOC2L LOC100130417 ISG15 SAMD11 TTLL10-AS1 HES4 AGRN MIR200A RNF223 TNFRSF4 LINC01342 PERM1 TTLL10 TNFRSF18 LOC105378948 PLEKHN1 KLHL17 LOC100288175 LOC284600 C1orf159 MIR429
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01128 ATAD3A MIR6727 ANKRD65 LOC107985728 SLC35E2 MIR6726 SDF4 LOC100287934 AURKAIP1 FAM132A MIB2 LOC148413 PUSL1 MIR6808 TMEM240 HES4 MRPL20 SLC35E2B MIR200A NADK RNF223 TNFRSF4 LINC01342 MXRA8 UBE2J2 TNFRSF18 PLEKHN1 LOC100288069 KLHL17 LOC107985729 LOC102724312 LOC100288175 FAM87B LOC284600 TAS1R3 FAM41C TMEM88B SSU72 MIR200B CDK11B DVL1 CCNL2 NOC2L LOC100130417 CPTP ISG15 SAMD11 TTLL10-AS1 CDK11A B3GALT6 VWA1 FNDC10 AGRN ATAD3C ACAP3 SCNN1D PERM1 TTLL10 LOC105378948 CPSF3L LINC00115 MMP23A ATAD3B MMP23B C1orf159 MIR429
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ATAD3A MIR6727 TAS1R3 TMEM88B ANKRD65 SSU72 MIR200B MIR6726 SDF4 CDK11B DVL1 AURKAIP1 CCNL2 CPTP FAM132A MIB2 LOC148413 PUSL1 MIR6808 TTLL10-AS1 TMEM240 MRPL20 B3GALT6 VWA1 FNDC10 MIR200A TNFRSF4 ATAD3C ACAP3 LINC01342 SCNN1D TTLL10 MXRA8 UBE2J2 TNFRSF18 CPSF3L ATAD3B MMP23B LOC107985729 LOC102724312 C1orf159 MIR429
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01128 FAM41C LOC107985728 MIR200B SDF4 NOC2L LOC100130417 FAM132A ISG15 SAMD11 TTLL10-AS1 HES4 B3GALT6 AGRN MIR200A RNF223 TNFRSF4 LINC01342 PERM1 TTLL10 UBE2J2 TNFRSF18 LOC105378948 PLEKHN1 LINC00115 KLHL17 LOC100288175 FAM87B LOC284600 C1orf159 MIR429
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion AGRN MIR200A MIR200B RNF223 TNFRSF4 LINC01342 SDF4 PERM1 TTLL10 TNFRSF18 LOC105378948 PLEKHN1 NOC2L KLHL17 ISG15 LOC100288175 SAMD11 C1orf159 TTLL10-AS1 MIR429 HES4
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6727 TAS1R3 TMEM88B ANKRD65 LOC107985728 MIR200B MIR6726 SDF4 DVL1 AURKAIP1 CCNL2 NOC2L LOC100130417 CPTP FAM132A ISG15 LOC148413 SAMD11 PUSL1 MIR6808 TTLL10-AS1 HES4 MRPL20 B3GALT6 AGRN MIR200A RNF223 TNFRSF4 ACAP3 LINC01342 SCNN1D PERM1 TTLL10 MXRA8 UBE2J2 TNFRSF18 LOC105378948 PLEKHN1 CPSF3L KLHL17 LOC100288175 LOC284600 C1orf159 MIR429
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6727 B3GALT6 MIR200A MIR200B TNFRSF4 ACAP3 MIR6726 SDF4 SCNN1D TTLL10 UBE2J2 TNFRSF18 CPSF3L FAM132A PUSL1 TTLL10-AS1 MIR429

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More Information


Additional Information:

For this assay, SNP(s) [rs74355107] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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