Hs01697240_cn

• Gene Symbol: SCP2
• Assay Reference Genome Location: Chr.1:52950843 on build GRCh38
• Cytoband: 1p32.3

Target Gene Details

• Entrez Gene ID: 6342
• Gene Name: sterol carrier protein 2
• Gene Aliases: NLTP, NSL-TP, SCP-2, SCP-CHI, SCP-X, SCPX
• Location: Chr.1:52927229-53051617 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SCP2	NM_001007098.2			NP_001007099.1
	NM_001193599.1	3	384	NP_001180528.1
	NM_001193600.1			NP_001180529.1
	NM_001193617.1	3	398	NP_001180546.1
	NM_002979.4	4	456	NP_002970.2
	XM_005271103.4	4	399	XP_005271160.1
	XM_011541935.2	4	399	XP_011540237.1
	XM_017002045.1	4	399	XP_016857534.1
	AB208789.1	4	408	BAD92026.1
	AK294631.1	3	327
	AK295214.1	3	341
	AK308105.1
	AK312856.1	4	407
	BC067108.1			AAH67108.1
	DC330171.1	4	440
	M75883.1	4	309	AAA03557.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1010121	Chr.1:52939995 - 53134678 on Build GRCh38	Gain	SLC1A7 MIR1273G SCP2 PODN
nsv1001535	Chr.1:52620368 - 53346539 on Build GRCh38	Gain	ZYG11B MIR1273F MIR1273G MIR5095 LRP8 CPT2 ECHDC2 PODN FAM159A LOC100507564 COA7 SLC1A7 C1orf123 ZYG11A SCP2 LOC105378732 MAGOH

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase, transfer/carrier protein

Gene Ontology Categories:

Process(es)

bile acid biosynthetic process
peroxisome organization
sterol transport
positive regulation of intracellular cholesterol transport
fatty acid beta-oxidation using acyl-CoA oxidase
alpha-linolenic acid metabolic process
lipid hydroperoxide transport

Function(s)

fatty-acyl-CoA binding
receptor binding
protein binding
sterol transporter activity
cholesterol binding
propanoyl-CoA C-acyltransferase activity
long-chain fatty acyl-CoA binding
propionyl-CoA C2-trimethyltridecanoyltransferase activity
oleic acid binding