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Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1312458 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01789620_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 15 - Intron 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK000549.1 BAA91246.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1

Target Gene Details

Entrez Gene ID:

 102465435

Gene Name:

 microRNA 6727

Gene Aliases:

 hsa-mir-6727

Location:

 Chr.1:1312502-1312566 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MIR6727 NR_106785.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MORN1 LOC284600 MXRA8 LOC100130417 LOC105378947 ATAD3B MTND1P23 TMEM52 TMEM240 LOC102724312 PLEKHN1 UBE2J2 CDK11B MIB2 HES4 FAM132A LOC107984841 LOC102725121 SAMD11 LOC100288175 DDX11L1 MIR429 AURKAIP1 TNFRSF18 GABRD LOC101928626 LOC100287934 MIR6859-1 ACAP3 MIR200B LOC107985729 MIR6727 LOC100506504 TTLL10-AS1 VWA1 LINC00115 AGRN SDF4 GNB1 CPSF3L LOC100132287 LOC105378592 LOC100134822 LOC105378589 NOC2L TAS1R3 OR4F29 SLC35E2 MIR6859-2 MIR6726 LOC100288069 LINC01128 LOC105378949 RNF223 MIR200A MIR6723 SCNN1D LOC107985728 WASH7P DVL1 ATAD3C MIR1302-2 LOC148413 SSU72 OR4F16 OR4F5 CDK11A ISG15 FAM138A SKI MIR6808 B3GALT6 TTLL10 SLC35E2B PRKCZ FAM87B PERM1 CCNL2 FNDC10 KLHL17 LOC729737 PUSL1 FAM41C LOC105378591 CPTP LOC100129534 FAAP20 MTND2P28 NADK CALML6 CFAP74 TMEM88B LINC01342 MRPL20 ATAD3A LOC100133331 ANKRD65 LOC105378948 C1orf159 MMP23B TNFRSF4 MMP23A
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss DVL1 MIR6727 CPSF3L MIR6808 MIR6726 PUSL1 CPTP ACAP3 TAS1R3
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss DVL1 MIR6727 CPSF3L AURKAIP1 MIR6808 MXRA8 MIR6726 PUSL1 CPTP SCNN1D ACAP3 TAS1R3
nsv997291 Chr.1:1306835 - 1376336 on Build GRCh38 Gain DVL1 MIR6727 CPSF3L AURKAIP1 MIR6808 MXRA8 PUSL1 CPTP ACAP3 TAS1R3
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6727 MIR200A MXRA8 SCNN1D TTLL10-AS1 SDF4 DVL1 CPSF3L UBE2J2 PUSL1 CPTP FAM132A LINC01342 TAS1R3 MIR429 AURKAIP1 C1orf159 TNFRSF18 MIR6808 TNFRSF4 MIR6726 B3GALT6 TTLL10 RNF223 ACAP3 MIR200B
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss DVL1 MIR6727 CPSF3L MIR6808 MXRA8 PUSL1 CPTP ACAP3 TAS1R3
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR6727 MIR200A SCNN1D TTLL10-AS1 AGRN SDF4 CPSF3L UBE2J2 PUSL1 CPTP FAM132A LINC01342 LOC100288175 TAS1R3 MIR429 LOC105378948 C1orf159 TNFRSF18 TNFRSF4 MIR6726 B3GALT6 TTLL10 RNF223 ACAP3 MIR200B
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion DVL1 MIR6727 CPSF3L AURKAIP1 MIR6808 MXRA8 MIR6726 PUSL1 CPTP SCNN1D ACAP3 TAS1R3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR200A LOC284600 MXRA8 LOC100130417 SCNN1D LOC107985728 ATAD3B TMEM240 DVL1 LOC102724312 ATAD3C PLEKHN1 UBE2J2 CDK11B LOC148413 MIB2 HES4 SSU72 FAM132A SAMD11 LOC100288175 CDK11A ISG15 MIR429 AURKAIP1 TNFRSF18 MIR6808 LOC100287934 B3GALT6 TTLL10 SLC35E2B ACAP3 MIR200B LOC107985729 MIR6727 FAM87B PERM1 TTLL10-AS1 CCNL2 VWA1 LINC00115 FNDC10 AGRN KLHL17 SDF4 CPSF3L PUSL1 FAM41C CPTP NADK NOC2L TMEM88B LINC01342 MRPL20 ATAD3A TAS1R3 ANKRD65 LOC105378948 C1orf159 SLC35E2 MMP23B TNFRSF4 MMP23A MIR6726 LOC100288069 LINC01128 RNF223
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss DVL1 MIR6727 CPSF3L MIR6808 MXRA8 PUSL1 CPTP ACAP3 TAS1R3
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6727 MIR200A MXRA8 SCNN1D TTLL10-AS1 ATAD3B CCNL2 VWA1 FNDC10 TMEM240 SDF4 DVL1 CPSF3L LOC102724312 ATAD3C UBE2J2 CDK11B PUSL1 CPTP LOC148413 MIB2 SSU72 FAM132A TMEM88B LINC01342 MRPL20 ATAD3A TAS1R3 MIR429 ANKRD65 AURKAIP1 C1orf159 TNFRSF18 MMP23B MIR6808 TNFRSF4 MIR6726 B3GALT6 TTLL10 ACAP3 MIR200B LOC107985729
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain DVL1 MIR6727 CPSF3L MIR6808 MXRA8 MIR6726 PUSL1 CPTP SCNN1D ACAP3 TAS1R3
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6727 MXRA8 SCNN1D TAS1R3 DVL1 CPSF3L AURKAIP1 MIR6808 UBE2J2 MIR6726 PUSL1 CPTP ACAP3
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6727 MIR200A LOC284600 MXRA8 LOC100130417 PERM1 SCNN1D LOC107985728 TTLL10-AS1 CCNL2 AGRN KLHL17 SDF4 DVL1 CPSF3L PLEKHN1 UBE2J2 PUSL1 CPTP LOC148413 HES4 NOC2L FAM132A TMEM88B LINC01342 MRPL20 SAMD11 LOC100288175 TAS1R3 ISG15 MIR429 ANKRD65 LOC105378948 AURKAIP1 C1orf159 TNFRSF18 MIR6808 TNFRSF4 MIR6726 B3GALT6 TTLL10 RNF223 ACAP3 MIR200B
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6727 MIR200A FAM132A SCNN1D TTLL10-AS1 MIR429 SDF4 CPSF3L TNFRSF18 UBE2J2 TNFRSF4 MIR6726 PUSL1 B3GALT6 TTLL10 ACAP3 MIR200B

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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