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See other ERCC2 CNV Assays ›
Gene Symbol
ERCC2
Assay Reference Genome
Location

Chr.19:45368980 on build GRCh38
Cytoband
19q13.32
Assay ID Hs01821078_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

2068

Gene Name:

ERCC excision repair 2, TFIIH core complex helicase subunit

Gene Aliases:

COFS2, EM9, TFIIH, TTD, TTD1, XPD

Location:

Chr.19:45349837-45370647 on Build GRCh38

Assay Gene Location:

Overlaps Intron 2 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ERCC2 NM_000400.3 NP_000391.1
NM_001130867.1 NP_001124339.1
XM_011526611.2 XP_011524913.1
XM_017026467.1 XP_016881956.1
AK303358.1
AL535248.3
BC108255.1 AAI08256.1
BC110522.1 AAI10523.1
BC110523.1 AAI10524.1
BG719746.1
BM769772.1
BT006883.1 AAP35529.1
BX376468.2
DA409300.1
X52221.1 CAA36463.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv833845 Chr.19:45308814 - 45457371 on Build GRCh38 Loss KLC3 MIR6088 CKM ERCC2 ERCC1 PPP1R13L CD3EAP
esv3644502 Chr.19:45323147 - 45403933 on Build GRCh38 Gain KLC3 ERCC2 PPP1R13L
dgv29n64 Chr.19:45334011 - 45373709 on Build GRCh38 Gain KLC3 ERCC2
dgv1054e212 Chr.19:45347119 - 45407663 on Build GRCh38 Gain KLC3 ERCC2 ERCC1 PPP1R13L CD3EAP
nsv579867 Chr.19:45323108 - 45408744 on Build GRCh38 Gain KLC3 ERCC2 ERCC1 PPP1R13L CD3EAP
esv3644504 Chr.19:45342675 - 45373732 on Build GRCh38 Gain KLC3 ERCC2
nsv1063547 Chr.19:45322368 - 45400204 on Build GRCh38 Gain KLC3 CKM ERCC2 PPP1R13L
nsv833844 Chr.19:45181051 - 45384148 on Build GRCh38 Loss EXOC3L2 KLC3 CKM ERCC2 BLOC1S3 PPP1R13L MARK4
dgv3606n100 Chr.19:45347435 - 45400204 on Build GRCh38 Gain KLC3 ERCC2 PPP1R13L
nsv442466 Chr.19:45347447 - 45388666 on Build GRCh38 Gain KLC3 ERCC2 PPP1R13L
nsv428365 Chr.19:45358027 - 45469089 on Build GRCh38 Gain+Loss FOSB MIR6088 ERCC2 ERCC1 PPP1R13L CD3EAP

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More Information


Set Membership:

Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA helicase

Gene Ontology Categories:

Function(s) Process(es)

nucleotide-excision repair, DNA duplex unwinding
response to hypoxia
in utero embryonic development
transcription-coupled nucleotide-excision repair
nucleotide-excision repair
nucleotide-excision repair, preincision complex stabilization
nucleotide-excision repair, preincision complex assembly
nucleotide-excision repair, DNA incision, 3'-to lesion
nucleotide-excision repair, DNA incision, 5'-to lesion
transcription initiation from RNA polymerase I promoter
transcription elongation from RNA polymerase I promoter
termination of RNA polymerase I transcription
transcription from RNA polymerase II promoter
transcription initiation from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
7-methylguanosine mRNA capping
protein phosphorylation
apoptotic process
response to oxidative stress
chromosome segregation
aging
cell proliferation
UV protection
post-embryonic development
viral process
spinal cord development
extracellular matrix organization
bone mineralization
central nervous system myelin formation
nucleotide-excision repair, DNA incision
multicellular organism growth
hair cell differentiation
embryonic cleavage
erythrocyte maturation
positive regulation of DNA binding
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
hair follicle maturation
hematopoietic stem cell differentiation
global genome nucleotide-excision repair
regulation of mitotic cell cycle phase transition
DNA binding
ATP-dependent DNA helicase activity
protein kinase activity
protein binding
ATP binding
protein C-terminus binding
DNA-dependent ATPase activity
RNA polymerase II carboxy-terminal domain kinase activity
5'-3' DNA helicase activity
metal ion binding
protein N-terminus binding
4 iron, 4 sulfur cluster binding

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