Hs01897984_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1319381 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1	6	896	NP_001243385.1
	NM_001256460.1	5	530	NP_001243389.1
	NM_001256462.1			NP_001243391.1
	NM_001256463.1			NP_001243392.1
	NM_017871.5	4	423	NP_060341.2
	XM_011541647.1	6	574	XP_011539949.1
	XM_011541648.1	6	578	XP_011539950.1
	XM_011541650.1			XP_011539952.1
	XM_017001557.1			XP_016857046.1
	XM_017001558.1			XP_016857047.1
	AK021939.1			BAB13943.1
	AK022675.1	2	1744
	AK023356.1	4	406	BAB14541.1
	AK027767.1	3	873
	AK056652.1	6	818
	AK058018.1
	AK092190.1
	AK291387.1	6	859
	AK297350.1	5	480
	AL136813.1	4	402	CAB66747.1
	BC000675.2			AAH00675.2
	BC007978.2	4	385	AAH07978.1
	BC008041.2			AAH08041.1
	BC020199.1			AAH20199.1
	CR533557.1	4	344	CAG38588.1
	DC295791.1	5	452
	DC299237.1	4	423
	DC299993.1	4	407

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	LOC105378947 TNFRSF18 MIR6859-1 TTLL10-AS1 ANKRD65 CPTP LOC107984841 MIR6808 MIR6723 B3GALT6 LOC102724312 FAM132A LOC100134822 LINC00115 MRPL20 LOC284600 PUSL1 ISG15 LOC105378589 LOC105378592 LOC100129534 MIR200A SAMD11 PERM1 MTND1P23 LOC105378949 TNFRSF4 TMEM52 MIR429 LOC100133331 MMP23B DDX11L1 MIR200B KLHL17 RNF223 MXRA8 ATAD3B UBE2J2 PLEKHN1 NOC2L MIR6859-2 LOC100132287 CALML6 CDK11A ATAD3C GABRD MMP23A PRKCZ LOC102725121 NADK HES4 TMEM240 VWA1 ACAP3 LINC01128 FAM41C LINC01342 LOC100287934 CFAP74 LOC100130417 SSU72 LOC100506504 LOC148413 TTLL10 LOC729737 LOC105378948 LOC101928626 FAM138A AGRN LOC100288175 FAAP20 SLC35E2B C1orf159 OR4F29 MORN1 CPSF3L SDF4 GNB1 OR4F5 LOC105378591 WASH7P CDK11B TAS1R3 SKI ATAD3A CCNL2 OR4F16 LOC107985729 MIR6727 LOC100288069 FAM87B MIR6726 MIR1302-2 SLC35E2 MIB2 DVL1 AURKAIP1 TMEM88B MTND2P28 SCNN1D LOC107985728 FNDC10
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	PUSL1 MIR6808 DVL1 MIR6726 MIR6727 TAS1R3 ACAP3 CPTP CPSF3L
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	PUSL1 MIR6808 MXRA8 DVL1 MIR6726 AURKAIP1 MIR6727 TAS1R3 SCNN1D ACAP3 CPTP CPSF3L
nsv997291	Chr.1:1306835 - 1376336 on Build GRCh38	Gain	PUSL1 MIR6808 MXRA8 DVL1 AURKAIP1 MIR6727 TAS1R3 ACAP3 CPTP CPSF3L
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	SDF4 TNFRSF4 TNFRSF18 MIR429 TAS1R3 TTLL10-AS1 ACAP3 CPTP MIR6808 B3GALT6 FAM132A LINC01342 MIR6727 MIR200B RNF223 MXRA8 UBE2J2 MIR6726 TTLL10 PUSL1 DVL1 AURKAIP1 MIR200A C1orf159 SCNN1D CPSF3L
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	PUSL1 MIR6808 MXRA8 DVL1 MIR6727 TAS1R3 ACAP3 CPTP CPSF3L
esv3584992	Chr.1:1314419 - 1330342 on Build GRCh38	Gain	CPTP CPSF3L
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	PUSL1 MIR6808 MXRA8 DVL1 MIR6726 AURKAIP1 MIR6727 TAS1R3 SCNN1D ACAP3 CPTP CPSF3L
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	SDF4 TNFRSF4 TNFRSF18 MIR429 TAS1R3 TTLL10-AS1 ACAP3 CPTP B3GALT6 FAM132A LINC01342 MIR6727 MIR200B RNF223 UBE2J2 MIR6726 TTLL10 LOC105378948 PUSL1 AGRN LOC100288175 MIR200A C1orf159 SCNN1D CPSF3L
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	TNFRSF18 NADK HES4 TMEM240 VWA1 TTLL10-AS1 ACAP3 ANKRD65 CPTP LINC01128 MIR6808 B3GALT6 LOC102724312 FAM132A FAM41C LINC01342 LOC100287934 LOC100130417 LINC00115 SSU72 MRPL20 LOC148413 LOC284600 TTLL10 LOC105378948 PUSL1 AGRN LOC100288175 ISG15 SLC35E2B MIR200A C1orf159 SAMD11 CPSF3L PERM1 SDF4 TNFRSF4 MIR429 CDK11B TAS1R3 ATAD3A CCNL2 MMP23B LOC107985729 MIR6727 MIR200B LOC100288069 KLHL17 RNF223 MXRA8 ATAD3B UBE2J2 FAM87B MIR6726 PLEKHN1 NOC2L SLC35E2 CDK11A ATAD3C MIB2 DVL1 AURKAIP1 MMP23A TMEM88B SCNN1D LOC107985728 FNDC10
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	PUSL1 MIR6808 MXRA8 DVL1 MIR6727 TAS1R3 ACAP3 CPTP CPSF3L
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	PUSL1 MIR6808 MXRA8 DVL1 MIR6726 MIR6727 TAS1R3 SCNN1D ACAP3 CPTP CPSF3L
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	SDF4 TNFRSF4 TNFRSF18 TMEM240 MIR429 VWA1 CDK11B TAS1R3 TTLL10-AS1 ACAP3 ANKRD65 CPTP MIR6808 ATAD3A B3GALT6 LOC102724312 CCNL2 FAM132A MMP23B LINC01342 LOC107985729 MIR6727 MIR200B SSU72 MXRA8 ATAD3B UBE2J2 MRPL20 MIR6726 LOC148413 TTLL10 PUSL1 ATAD3C MIB2 DVL1 AURKAIP1 MIR200A C1orf159 TMEM88B SCNN1D FNDC10 CPSF3L
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	MXRA8 UBE2J2 MIR6726 TAS1R3 ACAP3 CPTP PUSL1 MIR6808 DVL1 AURKAIP1 MIR6727 SCNN1D CPSF3L
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	PERM1 SDF4 TNFRSF4 TNFRSF18 HES4 MIR429 TAS1R3 TTLL10-AS1 ACAP3 ANKRD65 CPTP MIR6808 B3GALT6 CCNL2 FAM132A LINC01342 MIR6727 LOC100130417 MIR200B KLHL17 RNF223 MXRA8 UBE2J2 MRPL20 MIR6726 LOC148413 LOC284600 TTLL10 PLEKHN1 NOC2L LOC105378948 PUSL1 AGRN LOC100288175 ISG15 DVL1 AURKAIP1 MIR200A C1orf159 TMEM88B SCNN1D LOC107985728 SAMD11 CPSF3L
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	MIR200B SDF4 TNFRSF4 TNFRSF18 UBE2J2 MIR6726 TTLL10 MIR429 TTLL10-AS1 ACAP3 PUSL1 B3GALT6 FAM132A MIR200A MIR6727 SCNN1D CPSF3L

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity