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See other ARID1A CNV Assays ›
Gene Symbol
ARID1A
Assay Reference Genome
Location

Chr.1:26731517 on build GRCh38
Cytoband
1p36.11
Assay ID Hs01933558_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,496.00
Your Price
Online offer:
4496.0
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

8289

Gene Name:

AT-rich interaction domain 1A

Gene Aliases:

B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1

Location:

Chr.1:26696031-26782110 on Build GRCh38

Assay Gene Location:

Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARID1A NM_006015.4 3 2089 NP_006006.3
NM_139135.2 3 2089 NP_624361.1
AB001895.1 2 854 BAA23269.1
AB210022.1 3 678 BAE06104.1
AF219114.1 3 678 AAG17549.2
AF231056.1 3 2094 AAG33967.1
AF265208.1 3 644 AAF75765.1
AF268913.1 2 567 AAK54505.1
AF521670.1 3 858 AAN03446.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv1000012 Chr.1:26714969 - 27141528 on Build GRCh38 Gain FAM46B TRNP1 NUDC PIGV NR0B2 ARID1A SLC9A1 ZDHHC18 GPN2 SFN KDF1 GPATCH3

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More Information


Set Membership:

Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
neural tube closure
cardiac chamber development
optic cup formation involved in camera-type eye development
nucleosome disassembly
chromatin remodeling
maintenance of chromatin silencing
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
covalent chromatin modification
intracellular estrogen receptor signaling pathway
androgen receptor signaling pathway
forebrain development
nucleosome mobilization
glucocorticoid receptor signaling pathway
ATP-dependent chromatin remodeling
positive regulation of transcription, DNA-templated
chromatin-mediated maintenance of transcription
cardiac muscle cell differentiation
placenta blood vessel development
toxin transport
DNA binding
transcription coactivator activity
protein binding
ligand-dependent nuclear receptor binding
nucleosome binding

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