Hs02033887_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1314297 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Overlaps Intron 10 - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1			NP_001243385.1
	NM_001256460.1			NP_001243389.1
	NM_001256462.1			NP_001243391.1
	NM_001256463.1			NP_001243392.1
	NM_017871.5			NP_060341.2
	XM_011541647.1			XP_011539949.1
	XM_011541648.1			XP_011539950.1
	XM_011541650.1			XP_011539952.1
	XM_017001557.1			XP_016857046.1
	XM_017001558.1			XP_016857047.1
	AK021939.1			BAB13943.1
	AK023356.1			BAB14541.1
	AK056652.1
	AK058018.1
	AK092190.1
	AK123641.1	1	874
	AK291387.1
	AK297350.1
	AL136813.1			CAB66747.1
	BC000675.2			AAH00675.2
	BC007978.2			AAH07978.1
	BC008041.2			AAH08041.1
	BC013904.2			AAH13904.2
	BC020199.1			AAH20199.1
	CR533557.1			CAG38588.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	TAS1R3 MIR200A NOC2L ATAD3A KLHL17 TMEM240 LOC729737 ATAD3C ISG15 LOC105378592 LOC105378589 ANKRD65 LOC105378591 TTLL10-AS1 LOC148413 PERM1 LOC107985728 CDK11A B3GALT6 TMEM88B MTND2P28 UBE2J2 MIR200B MIB2 FAM41C PRKCZ DDX11L1 SCNN1D MIR6859-1 CALML6 FNDC10 MIR6808 MMP23B NADK MIR429 CPTP MTND1P23 FAM138A LOC105378949 C1orf159 SLC35E2 LOC102725121 LOC284600 MMP23A VWA1 MIR6723 CDK11B LINC01342 LINC00115 PLEKHN1 MORN1 HES4 MIR6726 OR4F16 LOC100133331 LOC100287934 LOC100288175 LOC105378948 SAMD11 LOC100134822 LOC100288069 SKI LOC107985729 LOC107984841 TMEM52 AURKAIP1 FAAP20 MXRA8 LOC102724312 DVL1 LOC101928626 AGRN LOC100506504 ATAD3B CFAP74 MRPL20 OR4F5 OR4F29 WASH7P LOC100130417 LINC01128 FAM132A TNFRSF18 ACAP3 SSU72 TTLL10 TNFRSF4 RNF223 GNB1 MIR1302-2 MIR6859-2 LOC100129534 MIR6727 PUSL1 GABRD CPSF3L SDF4 SLC35E2B LOC105378947 LOC100132287 CCNL2 FAM87B
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	MIR6726 CPTP TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 MIR6727 PUSL1
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	MIR6726 CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 SCNN1D MIR6727 PUSL1 AURKAIP1
nsv997291	Chr.1:1306835 - 1376336 on Build GRCh38	Gain	CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 MIR6727 PUSL1 AURKAIP1
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	MIR6726 TAS1R3 MIR6808 MIR200A MIR429 CPTP FAM132A TNFRSF18 ACAP3 TTLL10 C1orf159 TTLL10-AS1 TNFRSF4 RNF223 B3GALT6 MIR6727 PUSL1 LINC01342 AURKAIP1 UBE2J2 MXRA8 MIR200B DVL1 CPSF3L SDF4 SCNN1D
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 MIR6727 PUSL1
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	MIR6726 CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 SCNN1D MIR6727 PUSL1 AURKAIP1
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	MIR6726 TAS1R3 MIR200A MIR429 CPTP LOC100288175 FAM132A TNFRSF18 LOC105378948 ACAP3 TTLL10 C1orf159 TTLL10-AS1 TNFRSF4 RNF223 B3GALT6 MIR6727 PUSL1 LINC01342 UBE2J2 MIR200B CPSF3L SDF4 SCNN1D AGRN
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	MIR6726 TAS1R3 MIR200A NOC2L ATAD3A LOC100287934 LOC100288175 KLHL17 LOC105378948 TMEM240 ATAD3C SAMD11 ISG15 LOC100288069 ANKRD65 LOC107985729 TTLL10-AS1 LOC148413 PERM1 LOC107985728 CDK11A B3GALT6 TMEM88B AURKAIP1 UBE2J2 MXRA8 LOC102724312 MIR200B DVL1 MIB2 FAM41C SCNN1D AGRN ATAD3B FNDC10 MRPL20 MIR6808 MMP23B NADK LOC100130417 MIR429 CPTP LINC01128 FAM132A TNFRSF18 ACAP3 SSU72 TTLL10 C1orf159 SLC35E2 TNFRSF4 LOC284600 MMP23A RNF223 VWA1 CDK11B MIR6727 PUSL1 LINC01342 LINC00115 PLEKHN1 CPSF3L SDF4 SLC35E2B HES4 CCNL2 FAM87B
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 MIR6727 PUSL1
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	MIR6726 CPTP MXRA8 TAS1R3 DVL1 MIR6808 CPSF3L ACAP3 SCNN1D MIR6727 PUSL1
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	MIR6726 TAS1R3 FNDC10 MRPL20 MIR6808 MIR200A MMP23B ATAD3A MIR429 CPTP FAM132A TNFRSF18 TMEM240 ATAD3C ACAP3 SSU72 TTLL10 ANKRD65 C1orf159 LOC107985729 TTLL10-AS1 LOC148413 TNFRSF4 B3GALT6 VWA1 CDK11B MIR6727 TMEM88B PUSL1 LINC01342 AURKAIP1 UBE2J2 MXRA8 LOC102724312 MIR200B DVL1 CPSF3L MIB2 SDF4 SCNN1D CCNL2 ATAD3B
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	MIR6726 TAS1R3 MIR6808 MIR6727 PUSL1 AURKAIP1 UBE2J2 CPTP MXRA8 DVL1 CPSF3L ACAP3 SCNN1D
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	MIR6726 TAS1R3 MRPL20 MIR6808 MIR200A NOC2L LOC100130417 MIR429 CPTP LOC100288175 KLHL17 FAM132A TNFRSF18 LOC105378948 SAMD11 ISG15 ACAP3 TTLL10 ANKRD65 C1orf159 TTLL10-AS1 LOC148413 TNFRSF4 LOC284600 PERM1 RNF223 LOC107985728 B3GALT6 MIR6727 TMEM88B PUSL1 LINC01342 AURKAIP1 UBE2J2 MXRA8 PLEKHN1 MIR200B DVL1 CPSF3L SDF4 SCNN1D AGRN HES4 CCNL2
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	MIR6726 TTLL10-AS1 TNFRSF4 B3GALT6 MIR200A MIR6727 PUSL1 MIR429 UBE2J2 FAM132A TNFRSF18 MIR200B CPSF3L ACAP3 SDF4 SCNN1D TTLL10

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity