Hs02169496_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54058582 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 TARM1 CACNG6 MIR935 CACNG8
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 VSTM1 TARM1 PRPF31 TFPT OSCAR
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 TARM1 OSCAR
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 VSTM1 CACNG6 MIR935 CACNG8
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	ZNF331 MYADM LILRB2 MIR1283-1 MIR512-1 MIR520H ZNF818P ZNF845 MIR522 MIR516A1 VN1R2 MIR518A1 MIR526A2 MIR517B VN1R4 TFPT MIR515-2 MIR526B ZNF677 MBOAT7 MIR518C MIR371A PRPF31 MIR935 CACNG8 PRKCG ZNF765 NLRP12 MIR520C MIR1323 MIR520B LILRB3 MIR520G CNOT3 LILRB5 MIR521-1 DPRX CACNG6 MIR517C ZNF525 MIR518F MIR518B MIR518D MIR527 CACNG7 MIR517A MIR519C MIR519D LILRA6 MIR498 MIR526A1 LILRA5 MIR516B2 MIR519E MIR524 TPM3P9 ZNF665 MIR525 TSEN34 ZNF813 MIR371B LOC284379 MIR518E MIR372 OSCAR MIR520A LENG1 MIR521-2 MIR515-1 ZNF761 MIR516B1 MIR1283-2 MIR373 MIR520D RPS9 BIRC8 NDUFA3 MIR516A2 VSTM1 TARM1 MIR4752 MIR512-2 MIR520E MIR518A2 MIR519A1 LOC105372457 TMC4 MIR519B MIR520F MIR523 MIR519A2 FAM90A27P
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 VSTM1 TARM1 PRPF31 CACNG6 TFPT MIR935 CACNG8 OSCAR

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity