Hs02169496_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54058582 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT PRPF31 NDUFA3 OSCAR TARM1 VSTM1
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG8 TARM1 CACNG6 VSTM1
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	OSCAR TARM1 VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 MIR935 CACNG8 CACNG6 VSTM1
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MYADM MIR527 MIR518C MIR372 MIR518B MIR515-2 ZNF525 MIR517C ZNF813 MIR935 MIR519D MIR520B LOC105372457 MIR516A1 MIR519C MIR523 MIR371B MIR517B MIR516B2 MIR521-2 MIR521-1 TARM1 TPM3P9 RPS9 MIR1283-1 MIR518A1 DPRX LILRB5 MIR520H ZNF818P MIR515-1 LILRA6 NLRP12 LILRB2 MIR526A1 MIR518F MIR520F MIR519B MIR520E MIR520G MIR512-2 MIR518D CACNG8 FAM90A27P BIRC8 VN1R2 MIR520C MIR371A MIR1323 MIR516A2 CACNG6 MIR518E MIR519E TFPT ZNF331 MIR516B1 MIR519A1 MIR1283-2 MIR526B MIR518A2 CACNG7 MIR520D TSEN34 MIR498 ZNF845 LENG1 VSTM1 ZNF765 PRPF31 ZNF761 MIR512-1 LILRB3 NDUFA3 ZNF677 TMC4 CNOT3 MIR517A VN1R4 MIR524 MIR373 PRKCG MIR519A2 MIR526A2 MIR522 MIR520A OSCAR LILRA5 LOC284379 ZNF665 MIR525 MIR4752 MBOAT7
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT PRPF31 MIR935 CACNG8 NDUFA3 OSCAR TARM1 CACNG6 VSTM1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity