Hs02318254_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54058768 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6 TARM1 MIR935
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 NDUFA3 TFPT PRPF31 OSCAR TARM1
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 OSCAR TARM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG7 CACNG8 CACNG6 MIR935
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	RPS9 MIR373 ZNF525 TSEN34 MIR521-1 MIR520A MIR519D MIR519A1 MIR512-1 ZNF331 MIR518F MIR526A2 ZNF761 TARM1 MIR517B MIR519C MIR524 LILRB2 VN1R4 MIR1283-1 VN1R2 MIR518B CACNG8 LOC284379 MIR520E VSTM1 ZNF765 MIR523 MIR522 MIR518D MIR519A2 LILRB5 NLRP12 MIR520C MIR519E MIR518A2 MIR518E ZNF845 FAM90A27P TMC4 LILRA6 DPRX MIR515-1 NDUFA3 MYADM MIR521-2 MIR1283-2 TFPT MIR512-2 MIR520H PRPF31 MIR526B MIR525 ZNF665 MIR518A1 ZNF818P MIR371A CACNG7 ZNF813 MIR527 MIR516A1 MIR371B CNOT3 MIR372 MIR526A1 MIR517A PRKCG MIR518C MIR935 MIR4752 MIR516B1 MIR516A2 MIR515-2 MIR1323 MBOAT7 MIR517C MIR498 MIR520F MIR519B MIR520G LILRA5 MIR520B LENG1 BIRC8 TPM3P9 MIR520D LOC105372457 LILRB3 MIR516B2 ZNF677 OSCAR CACNG6
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	VSTM1 NDUFA3 TFPT PRPF31 CACNG8 OSCAR CACNG6 TARM1 MIR935

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity