Hs02318254_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54058768 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 TFPT VSTM1 TARM1 PRPF31 OSCAR
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 TARM1 MIR935 CACNG8 CACNG6
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 TARM1 OSCAR
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 VSTM1 MIR935 CACNG8 CACNG6
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	LOC105372457 NDUFA3 MIR373 MIR521-2 TARM1 MIR516A2 ZNF818P MIR4752 MIR519B MIR516B1 MIR519D MIR519C TFPT MIR518E MIR526B MIR520F NLRP12 MIR524 MIR520D MIR520G MIR515-2 LILRB2 MIR526A2 MIR517C MIR519A1 MIR525 OSCAR PRKCG MIR520H MIR935 LILRB3 MIR520A MIR520E RPS9 CNOT3 MIR1283-1 ZNF765 MIR523 MIR518D CACNG7 VSTM1 BIRC8 CACNG8 CACNG6 MIR516A1 TMC4 MIR515-1 DPRX LILRB5 MIR516B2 MIR519A2 ZNF331 MIR517A LILRA5 VN1R2 ZNF845 MIR527 MYADM MIR517B MIR1323 TSEN34 MIR518A2 ZNF525 PRPF31 MIR371A MIR526A1 VN1R4 MIR1283-2 ZNF665 MIR498 TPM3P9 ZNF761 MIR519E LILRA6 MIR371B MIR518A1 MIR372 MIR518B MIR520B MIR518F MIR512-2 MIR522 MIR518C ZNF677 MIR512-1 LENG1 LOC284379 FAM90A27P MIR521-1 ZNF813 MIR520C MBOAT7
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 TFPT VSTM1 TARM1 PRPF31 MIR935 CACNG8 CACNG6 OSCAR

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity