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Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1213999 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02418235_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542075.2 XP_011540377.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MTND1P23 MIR6859-2 VWA1 MIR1302-2 SSU72 MIR429 LINC00115 LOC107985728 LINC01128 AGRN LINC01342 CDK11B MIR6859-1 OR4F29 ATAD3C LOC105378591 LOC105378947 FNDC10 FAM41C MIR6727 KLHL17 CPSF3L ATAD3B SAMD11 TTLL10-AS1 MXRA8 LOC148413 PUSL1 PLEKHN1 WASH7P RNF223 CPTP MMP23A SCNN1D TMEM52 LOC100287934 CALML6 PERM1 LOC729737 FAM138A LOC100132287 TMEM240 HES4 MMP23B CCNL2 OR4F5 GNB1 SDF4 FAM132A LOC284600 SLC35E2 NADK MIR200B ATAD3A MIR6808 LOC105378949 MIR6723 LOC101928626 LOC100506504 LOC100288175 SLC35E2B TTLL10 DDX11L1 C1orf159 TAS1R3 LOC100288069 UBE2J2 LOC107984841 LOC100133331 FAM87B MIB2 LOC100130417 OR4F16 TNFRSF4 MTND2P28 LOC102724312 MORN1 DVL1 TNFRSF18 PRKCZ LOC105378592 LOC100129534 B3GALT6 MIR200A MRPL20 GABRD TMEM88B AURKAIP1 MIR6726 CFAP74 ISG15 LOC105378589 LOC102725121 NOC2L CDK11A LOC100134822 FAAP20 LOC105378948 LOC107985729 ACAP3 ANKRD65 SKI
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TNFRSF18 B3GALT6 MIR200B TTLL10-AS1 UBE2J2 MIR429 MIR200A LOC105378948 RNF223 TNFRSF4 TTLL10 SDF4 FAM132A SCNN1D LINC01342 C1orf159
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TNFRSF18 B3GALT6 MIR200B TTLL10-AS1 MXRA8 MIR429 MIR200A MIR6808 PUSL1 AURKAIP1 MIR6726 RNF223 TTLL10 CPTP SCNN1D LINC01342 C1orf159 TAS1R3 UBE2J2 TNFRSF4 SDF4 FAM132A MIR6727 ACAP3 DVL1 CPSF3L
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 B3GALT6 TNFRSF4 TTLL10 SDF4 TTLL10-AS1
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF18 B3GALT6 MIR200B TTLL10-AS1 MIR429 MIR200A PUSL1 LOC100288175 MIR6726 RNF223 TTLL10 CPTP SCNN1D AGRN LINC01342 C1orf159 TAS1R3 UBE2J2 LOC105378948 TNFRSF4 SDF4 FAM132A MIR6727 ACAP3 CPSF3L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF18 SAMD11 MIR200B TTLL10-AS1 MIR429 MIR200A LOC100288175 PLEKHN1 RNF223 LOC107985728 TTLL10 ISG15 AGRN LINC01342 C1orf159 NOC2L PERM1 LOC105378948 HES4 LOC100130417 FAM41C TNFRSF4 SDF4 KLHL17 LOC284600
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR200B VWA1 ATAD3A SSU72 MIR429 LINC00115 MIR6808 LOC100288175 LOC107985728 SLC35E2B TTLL10 LINC01128 AGRN LINC01342 C1orf159 CDK11B TAS1R3 ATAD3C LOC100288069 UBE2J2 FNDC10 FAM87B MIB2 LOC100130417 FAM41C TNFRSF4 LOC102724312 MIR6727 KLHL17 DVL1 CPSF3L ATAD3B TNFRSF18 SAMD11 B3GALT6 TTLL10-AS1 MXRA8 LOC148413 MIR200A MRPL20 PUSL1 TMEM88B AURKAIP1 PLEKHN1 MIR6726 RNF223 CPTP MMP23A SCNN1D ISG15 NOC2L LOC100287934 CDK11A PERM1 LOC105378948 TMEM240 HES4 MMP23B CCNL2 SDF4 FAM132A LOC107985729 ACAP3 LOC284600 SLC35E2 ANKRD65 NADK
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TNFRSF18 B3GALT6 MIR200B VWA1 ATAD3A SSU72 TTLL10-AS1 MXRA8 MIR429 LOC148413 MIR200A MIR6808 MRPL20 PUSL1 TMEM88B AURKAIP1 MIR6726 TTLL10 CPTP SCNN1D LINC01342 C1orf159 CDK11B TAS1R3 ATAD3C UBE2J2 FNDC10 TMEM240 MIB2 MMP23B CCNL2 TNFRSF4 SDF4 FAM132A LOC102724312 MIR6727 LOC107985729 ACAP3 DVL1 CPSF3L ANKRD65 ATAD3B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF18 SAMD11 B3GALT6 MIR200B TTLL10-AS1 MIR429 LINC00115 MIR200A LOC100288175 PLEKHN1 RNF223 LOC107985728 TTLL10 LINC01128 ISG15 AGRN LINC01342 C1orf159 NOC2L UBE2J2 PERM1 LOC105378948 FAM87B HES4 LOC100130417 FAM41C TNFRSF4 SDF4 FAM132A KLHL17 LOC284600
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TNFRSF18 SAMD11 MIR200B TTLL10-AS1 PERM1 MIR429 MIR200A LOC105378948 LOC100288175 PLEKHN1 HES4 RNF223 TNFRSF4 TTLL10 SDF4 KLHL17 ISG15 AGRN LINC01342 C1orf159 NOC2L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TNFRSF18 SAMD11 B3GALT6 MIR200B TTLL10-AS1 MXRA8 MIR429 LOC148413 MIR200A MIR6808 MRPL20 PUSL1 TMEM88B AURKAIP1 LOC100288175 PLEKHN1 MIR6726 RNF223 LOC107985728 TTLL10 CPTP SCNN1D ISG15 AGRN LINC01342 C1orf159 NOC2L TAS1R3 UBE2J2 PERM1 LOC105378948 HES4 LOC100130417 CCNL2 TNFRSF4 SDF4 FAM132A MIR6727 KLHL17 ACAP3 LOC284600 DVL1 CPSF3L ANKRD65
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF18 B3GALT6 MIR200B TTLL10-AS1 UBE2J2 MIR429 MIR200A PUSL1 MIR6726 TNFRSF4 TTLL10 SDF4 FAM132A SCNN1D MIR6727 ACAP3 CPSF3L

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