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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:939137 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02799732_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 6 - Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain AGRN KLHL17 PERM1 C1orf159 NOC2L HES4 LOC107985728 LOC105378948 LOC100288175 ISG15 RNF223 SAMD11 LOC284600 LOC100130417 PLEKHN1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378589 SLC35E2B B3GALT6 CCNL2 KLHL17 LOC100134822 MIR6859-1 SCNN1D FAM41C FAM132A CDK11A DDX11L1 LOC105378592 DVL1 TNFRSF4 ANKRD65 LOC107985729 UBE2J2 LOC101928626 LOC148413 LOC107984841 MIR6859-2 LOC102724312 LOC100506504 LOC100133331 TAS1R3 LOC102725121 CPSF3L SLC35E2 TMEM240 LINC01342 NOC2L MIR1302-2 MIR429 LOC100288175 SKI OR4F16 LOC284600 AURKAIP1 LOC105378947 LINC00115 MMP23B AGRN TTLL10 PUSL1 GABRD CPTP MIR6726 FNDC10 OR4F5 TTLL10-AS1 MORN1 HES4 ISG15 OR4F29 PLEKHN1 SSU72 LINC01128 MIR6727 MTND1P23 LOC100132287 GNB1 PRKCZ MTND2P28 LOC107985728 MIR6723 CFAP74 CDK11B ATAD3C NADK MXRA8 TMEM88B LOC105378948 MIR200A SDF4 MRPL20 FAAP20 LOC100129534 ACAP3 MIR6808 PERM1 MIB2 VWA1 FAM87B LOC105378591 CALML6 LOC100288069 TNFRSF18 MIR200B FAM138A WASH7P SAMD11 TMEM52 ATAD3B C1orf159 ATAD3A LOC105378949 RNF223 LOC729737 MMP23A LOC100287934 LOC100130417
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion AGRN KLHL17 PERM1 C1orf159 NOC2L HES4 LOC107985728 LOC105378948 LOC100288175 ISG15 RNF223 SAMD11 LOC284600 LOC100130417 PLEKHN1
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC107985728 KLHL17 PERM1 SAMD11 LOC284600 LOC100130417 PLEKHN1 NOC2L
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss SAMD11 NOC2L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LINC01342 KLHL17 PERM1 NOC2L FAM41C MIR429 LOC107985728 LOC100288175 TNFRSF18 MIR200B SAMD11 LOC284600 TNFRSF4 AGRN TTLL10 C1orf159 TTLL10-AS1 HES4 LOC105378948 ISG15 RNF223 MIR200A LOC100130417 PLEKHN1 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SSU72 SLC35E2B B3GALT6 LINC01128 CCNL2 MIR6727 KLHL17 SCNN1D FAM41C FAM132A CDK11A LOC107985728 DVL1 TNFRSF4 ANKRD65 CDK11B LOC107985729 UBE2J2 ATAD3C LOC148413 NADK MXRA8 LOC102724312 TMEM88B TAS1R3 LOC105378948 CPSF3L SLC35E2 MIR200A SDF4 TMEM240 LINC01342 MRPL20 ACAP3 MIR6808 PERM1 MIB2 VWA1 FAM87B NOC2L LOC100288069 MIR429 LOC100288175 TNFRSF18 MIR200B SAMD11 LOC284600 AURKAIP1 LINC00115 MMP23B AGRN ATAD3B TTLL10 PUSL1 C1orf159 ATAD3A CPTP MIR6726 FNDC10 TTLL10-AS1 HES4 ISG15 RNF223 MMP23A LOC100287934 LOC100130417 PLEKHN1
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LINC01128 KLHL17 MTND1P23 PERM1 FAM87B NOC2L LOC100288069 FAM41C MTND2P28 LOC107985728 LOC100288175 OR4F16 SAMD11 LOC284600 MIR6723 LOC105378947 LINC00115 LOC101928626 AGRN LOC107984841 C1orf159 LOC100133331 HES4 LOC105378948 ISG15 RNF223 LOC100287934 LOC100130417 PLEKHN1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss B3GALT6 LINC01342 LINC01128 KLHL17 PERM1 FAM87B NOC2L FAM41C MIR429 FAM132A LOC107985728 LOC100288175 TNFRSF18 MIR200B SAMD11 LOC284600 TNFRSF4 LINC00115 UBE2J2 AGRN TTLL10 C1orf159 TTLL10-AS1 HES4 LOC105378948 ISG15 RNF223 MIR200A LOC100130417 PLEKHN1 SDF4
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LINC00115 LINC01128 LOC107984841 FAM87B LOC100133331 LOC100288069 FAM41C LOC107985728 OR4F16 SAMD11 LOC284600 LOC100287934 LOC100130417
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LINC00115 LINC01128 FAM41C LOC107985728 SAMD11 LOC284600 LOC100287934 LOC100130417 FAM87B
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN HES4 LOC107985728 KLHL17 ISG15 PERM1 SAMD11 LOC284600 LOC100130417 PLEKHN1 NOC2L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain B3GALT6 LINC01342 MRPL20 CCNL2 MIR6727 ACAP3 KLHL17 MIR6808 PERM1 NOC2L SCNN1D MIR429 FAM132A LOC107985728 LOC100288175 TNFRSF18 MIR200B SAMD11 LOC284600 DVL1 AURKAIP1 TNFRSF4 ANKRD65 UBE2J2 AGRN LOC148413 TTLL10 PUSL1 MXRA8 C1orf159 TMEM88B CPTP MIR6726 TAS1R3 TTLL10-AS1 HES4 LOC105378948 ISG15 RNF223 CPSF3L MIR200A LOC100130417 PLEKHN1 SDF4
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LINC01128 FAM41C HES4 LOC107985728 KLHL17 PERM1 SAMD11 LOC284600 LOC100130417 PLEKHN1 NOC2L

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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