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Gene Symbol
MEGF6
Assay Reference Genome
Location

Chr.1:3490084 on build GRCh38
Cytoband
1p36.32
Assay ID Hs02960537_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1953

Gene Name:

 multiple EGF like domains 6

Gene Aliases:

 EGFL3

Location:

 Chr.1:3487942-3624757 on Build GRCh38

Assay Gene Location:

 Within Exon 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MEGF6 NM_001409.3 37 5297 NP_001400.3
XM_006710406.3 34 4932 XP_006710469.1
XM_011540885.1 38 5602 XP_011539187.1
XM_011540886.1 37 5473 XP_011539188.1
XM_011540887.2 33 4810 XP_011539189.1
XM_017000533.1 37 5470 XP_016856022.1
AB011539.2 30 4337 BAA32467.2
AB231860.1 37 5298
AF086226.1 1 423

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2758915 Chr.1:3372374 - 3632289 on Build GRCh38 Gain TPRG1L PRDM16 ARHGEF16 MIR551A WRAP73 MEGF6
nsv470687 Chr.1:3356499 - 3763210 on Build GRCh38 Loss TP73-AS1 TPRG1L CCDC27 TP73 PRDM16 ARHGEF16 MIR551A WRAP73 MEGF6
nsv1012423 Chr.1:3477686 - 4747449 on Build GRCh38 Gain LINC01346 LRRC47 LINC01134 CCDC27 C1orf174 DFFB CEP104 MIR551A SMIM1 WRAP73 MEGF6 TP73-AS1 AJAP1 TPRG1L LOC284661 TP73 ARHGEF16
nsv951959 Chr.1:3051037 - 3812036 on Build GRCh38 Deletion MIR4251 LOC105378604 LRRC47 CCDC27 LINC00982 PRDM16 MIR551A SMIM1 WRAP73 MEGF6 TP73-AS1 TPRG1L TP73 ARHGEF16
esv3893545 Chr.1:3460878 - 3512044 on Build GRCh38 Loss ARHGEF16 MEGF6
nsv830203 Chr.1:3446374 - 3607752 on Build GRCh38 Loss ARHGEF16 MIR551A MEGF6
nsv299 Chr.1:3476928 - 3512705 on Build GRCh38 Insertion ARHGEF16 MEGF6

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More Information


Additional Information:

For this assay, SNP(s) [rs149151273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix protein

Gene Ontology Categories:

Function(s) Process(es)


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