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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940959 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03333427_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC100288175 LOC100130417 LOC284600 KLHL17 RNF223 C1orf159 AGRN ISG15 PERM1 LOC107985728 LOC105378948 NOC2L PLEKHN1 SAMD11 HES4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LINC01128 TTLL10 LOC100130417 MIB2 MMP23A MIR200A LOC100506504 CFAP74 SLC35E2B FAM138A NADK CDK11B TAS1R3 GNB1 MIR6859-2 OR4F16 MIR6726 TMEM52 SDF4 FAM87B FAM132A AGRN LOC105378592 MIR6727 PERM1 MTND1P23 DDX11L1 NOC2L PUSL1 PLEKHN1 TMEM88B AURKAIP1 SAMD11 SKI LOC100287934 ATAD3B MMP23B MIR200B OR4F5 CALML6 LINC00115 LINC01342 TNFRSF4 FNDC10 B3GALT6 LOC729737 MIR6859-1 GABRD MTND2P28 LOC105378589 KLHL17 WASH7P SSU72 LOC107985729 LOC107985728 SLC35E2 LOC105378948 MORN1 LOC105378947 RNF223 LOC102724312 MRPL20 MXRA8 HES4 LOC105378949 LOC102725121 LOC100288175 LOC100133331 LOC284600 FAAP20 VWA1 PRKCZ MIR6808 C1orf159 ISG15 CPSF3L MIR1302-2 ATAD3A TNFRSF18 TMEM240 UBE2J2 LOC100288069 LOC100132287 MIR6723 SCNN1D MIR429 LOC100134822 ATAD3C LOC107984841 CCNL2 LOC105378591 ACAP3 LOC101928626 ANKRD65 TTLL10-AS1 OR4F29 LOC148413 FAM41C LOC100129534 DVL1 CPTP CDK11A
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC100288175 LOC100130417 LOC284600 KLHL17 RNF223 C1orf159 AGRN ISG15 PERM1 LOC107985728 LOC105378948 NOC2L PLEKHN1 SAMD11 HES4
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PERM1 LOC107985728 LOC100130417 LOC284600 KLHL17 NOC2L PLEKHN1 SAMD11
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TTLL10 LOC100130417 MIR200A RNF223 MIR429 MIR200B HES4 LINC01342 TNFRSF4 LOC100288175 LOC284600 KLHL17 SDF4 TTLL10-AS1 FAM41C C1orf159 AGRN ISG15 PERM1 LOC107985728 LOC105378948 TNFRSF18 NOC2L PLEKHN1 SAMD11
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LINC01128 TTLL10 LOC100130417 MIB2 MMP23A MIR200A RNF223 SLC35E2B LOC102724312 NADK CDK11B TAS1R3 MRPL20 MXRA8 HES4 LOC100288175 LOC284600 MIR6726 VWA1 SDF4 FAM87B MIR6808 FAM132A C1orf159 AGRN ISG15 MIR6727 PERM1 CPSF3L ATAD3A TNFRSF18 NOC2L PUSL1 TMEM240 UBE2J2 PLEKHN1 TMEM88B AURKAIP1 SAMD11 LOC100288069 LOC100287934 SCNN1D ATAD3B MIR429 MMP23B MIR200B ATAD3C LINC00115 LINC01342 TNFRSF4 FNDC10 B3GALT6 CCNL2 ACAP3 ANKRD65 KLHL17 TTLL10-AS1 LOC148413 FAM41C SSU72 LOC107985729 LOC107985728 SLC35E2 LOC105378948 DVL1 CPTP CDK11A
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LINC01128 LOC100130417 MIR6723 LOC100287934 LOC105378947 RNF223 LOC107984841 LINC00115 HES4 LOC100288175 OR4F16 MTND2P28 LOC100133331 LOC101928626 LOC284600 KLHL17 FAM87B FAM41C C1orf159 AGRN ISG15 PERM1 LOC107985728 LOC105378948 MTND1P23 NOC2L PLEKHN1 SAMD11 LOC100288069
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01128 TTLL10 LOC100130417 MIR200A RNF223 MIR429 MIR200B LINC00115 HES4 LINC01342 TNFRSF4 B3GALT6 LOC100288175 LOC284600 KLHL17 SDF4 TTLL10-AS1 FAM87B FAM41C FAM132A C1orf159 AGRN ISG15 PERM1 LOC107985728 LOC105378948 TNFRSF18 NOC2L UBE2J2 PLEKHN1 SAMD11
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LOC100288175 KLHL17 RNF223 C1orf159 AGRN ISG15 PERM1 LOC105378948 NOC2L PLEKHN1 SAMD11 HES4 LINC01342
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC100288175 TTLL10 KLHL17 SDF4 MIR200A TTLL10-AS1 RNF223 C1orf159 AGRN MIR429 ISG15 PERM1 LOC105378948 TNFRSF18 MIR200B NOC2L PLEKHN1 SAMD11 HES4 LINC01342 TNFRSF4
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN ISG15 PERM1 LOC107985728 LOC100130417 LOC284600 KLHL17 NOC2L PLEKHN1 SAMD11 HES4
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TTLL10 LOC100130417 MIR200A RNF223 SCNN1D MIR429 MIR200B TAS1R3 MRPL20 MXRA8 HES4 LINC01342 TNFRSF4 B3GALT6 LOC100288175 CCNL2 ACAP3 ANKRD65 LOC284600 KLHL17 MIR6726 SDF4 TTLL10-AS1 LOC148413 MIR6808 FAM132A C1orf159 AGRN ISG15 MIR6727 PERM1 LOC107985728 CPSF3L LOC105378948 TNFRSF18 DVL1 NOC2L PUSL1 UBE2J2 PLEKHN1 TMEM88B CPTP AURKAIP1 SAMD11
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain PERM1 LOC107985728 LINC01128 LOC100130417 LOC284600 KLHL17 NOC2L PLEKHN1 SAMD11 FAM41C HES4

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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