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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1228307 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03334001_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF4 CPSF3L AGRN B3GALT6 TTLL10-AS1 LOC100288175 UBE2J2 C1orf159 TNFRSF18 MIR200A MIR6726 MIR200B SDF4 PUSL1 CPTP LOC105378948 MIR429 MIR6727 FAM132A RNF223 ACAP3 LINC01342 TTLL10 SCNN1D TAS1R3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CDK11A TNFRSF4 AGRN B3GALT6 TTLL10-AS1 LOC107985728 AURKAIP1 TMEM240 FAM41C C1orf159 LOC100288069 TNFRSF18 ATAD3A FNDC10 HES4 SSU72 PERM1 LOC284600 MIR200B LOC102724312 LOC100287934 SLC35E2B PUSL1 LOC105378948 MIR429 MIR6727 LINC01128 RNF223 LINC01342 MMP23A TTLL10 LOC100130417 ANKRD65 ATAD3C TAS1R3 MMP23B VWA1 SLC35E2 CDK11B CPSF3L SAMD11 LOC100288175 DVL1 TMEM88B MIB2 UBE2J2 MIR200A FAM87B MIR6726 NOC2L MXRA8 KLHL17 CCNL2 MRPL20 SDF4 CPTP FAM132A LOC107985729 ACAP3 PLEKHN1 NADK LOC148413 LINC00115 SCNN1D MIR6808 ISG15 ATAD3B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CDK11A MIR6723 TNFRSF4 AGRN B3GALT6 MIR6859-2 TTLL10-AS1 WASH7P TMEM240 FAM41C TNFRSF18 LOC105378589 FNDC10 LOC100129534 SSU72 PERM1 LOC284600 MIR200B MIR1302-2 LOC105378948 MIR6727 LINC01128 LINC01342 TTLL10 LOC107984841 ANKRD65 LOC729737 GNB1 LOC105378949 VWA1 SLC35E2 CDK11B SAMD11 LOC100288175 TMEM88B MIB2 MIR200A LOC102725121 FAM87B LOC100134822 NOC2L MXRA8 KLHL17 CCNL2 MRPL20 GABRD SDF4 FAM132A LINC00115 OR4F29 ISG15 PRKCZ MTND2P28 TMEM52 LOC101928626 LOC107985728 AURKAIP1 C1orf159 LOC100288069 ATAD3A HES4 FAM138A LOC102724312 LOC100287934 SLC35E2B PUSL1 MIR429 CALML6 RNF223 MMP23A CFAP74 LOC100130417 ATAD3C TAS1R3 MMP23B SKI OR4F16 CPSF3L DVL1 LOC100133331 MTND1P23 LOC105378947 UBE2J2 FAAP20 LOC100132287 MIR6726 OR4F5 CPTP MORN1 LOC107985729 LOC105378592 LOC105378591 ACAP3 PLEKHN1 NADK LOC148413 SCNN1D MIR6808 MIR6859-1 DDX11L1 LOC100506504 ATAD3B
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss FAM132A UBE2J2 SDF4 B3GALT6
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B VWA1 CDK11B TNFRSF4 CPSF3L B3GALT6 TTLL10-AS1 DVL1 AURKAIP1 TMEM88B TMEM240 MIB2 UBE2J2 C1orf159 TNFRSF18 ATAD3A MIR200A FNDC10 MIR6726 MXRA8 SSU72 CCNL2 MRPL20 MIR200B SDF4 LOC102724312 PUSL1 CPTP MIR429 MIR6727 FAM132A LOC107985729 ACAP3 LINC01342 LOC148413 TTLL10 SCNN1D MIR6808 ANKRD65 ATAD3C TAS1R3 ATAD3B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF4 AGRN B3GALT6 SAMD11 TTLL10-AS1 LOC100288175 LOC107985728 FAM41C UBE2J2 C1orf159 TNFRSF18 MIR200A HES4 FAM87B NOC2L PERM1 KLHL17 LOC284600 MIR200B SDF4 LOC105378948 MIR429 LINC01128 FAM132A RNF223 PLEKHN1 LINC01342 LINC00115 TTLL10 LOC100130417 ISG15
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TNFRSF4 CPSF3L AGRN B3GALT6 SAMD11 TTLL10-AS1 LOC100288175 DVL1 LOC107985728 AURKAIP1 TMEM88B UBE2J2 C1orf159 TNFRSF18 MIR200A HES4 MIR6726 NOC2L MXRA8 PERM1 KLHL17 CCNL2 LOC284600 MRPL20 MIR200B SDF4 PUSL1 CPTP LOC105378948 MIR429 MIR6727 FAM132A RNF223 ACAP3 PLEKHN1 LINC01342 LOC148413 TTLL10 SCNN1D MIR6808 LOC100130417 ANKRD65 TAS1R3 ISG15
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200B SDF4 TNFRSF4 B3GALT6 LOC105378948 MIR429 TTLL10-AS1 FAM132A RNF223 LINC01342 TTLL10 UBE2J2 C1orf159 SCNN1D TNFRSF18 MIR200A
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TNFRSF4 CPSF3L B3GALT6 TTLL10-AS1 DVL1 AURKAIP1 UBE2J2 C1orf159 TNFRSF18 MIR200A MIR6726 MXRA8 MIR200B SDF4 PUSL1 CPTP MIR429 MIR6727 FAM132A RNF223 ACAP3 LINC01342 TTLL10 SCNN1D MIR6808 TAS1R3
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 SDF4 TNFRSF4 TNFRSF18 B3GALT6 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6726 MIR200B SDF4 TNFRSF4 CPSF3L PUSL1 B3GALT6 MIR429 MIR6727 TTLL10-AS1 FAM132A ACAP3 TTLL10 UBE2J2 SCNN1D TNFRSF18 MIR200A

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