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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1222704 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03338848_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication RNF223 LOC100288175 MIR6726 ACAP3 MIR429 MIR200B TNFRSF4 LINC01342 SCNN1D AGRN TAS1R3 CPTP C1orf159 CPSF3L SDF4 UBE2J2 PUSL1 TNFRSF18 FAM132A TTLL10 MIR6727 TTLL10-AS1 LOC105378948 MIR200A B3GALT6
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100287934 MXRA8 MIR6808 CCNL2 TMEM240 ANKRD65 LOC107985729 LOC100288175 MIR6726 NOC2L ACAP3 SLC35E2B MIR429 ISG15 SCNN1D LOC100288069 PLEKHN1 NADK KLHL17 C1orf159 SDF4 LOC100130417 TNFRSF18 LINC00115 TTLL10 AURKAIP1 MIR6727 TTLL10-AS1 FAM41C ATAD3B SLC35E2 MIR200A LINC01128 HES4 SSU72 VWA1 FNDC10 LOC148413 RNF223 LOC102724312 SAMD11 DVL1 MIR200B TNFRSF4 PERM1 LINC01342 AGRN TAS1R3 CPTP CDK11A ATAD3C LOC284600 CPSF3L UBE2J2 PUSL1 FAM87B TMEM88B MIB2 FAM132A LOC105378948 MMP23B LOC107985728 ATAD3A CDK11B MRPL20 MMP23A B3GALT6
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss SDF4 UBE2J2 FAM132A B3GALT6
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100287934 CCNL2 LOC105378589 CFAP74 GNB1 LOC100288175 MIR6726 NOC2L ACAP3 MIR429 MIR6723 SCNN1D LOC100134822 NADK KLHL17 GABRD MTND1P23 SDF4 LOC100130417 TNFRSF18 LINC00115 TTLL10-AS1 ATAD3B TMEM52 MTND2P28 MIR200A LINC01128 SSU72 VWA1 OR4F16 LOC148413 LOC102724312 LOC105378592 SAMD11 DVL1 OR4F5 DDX11L1 MIR200B PERM1 LINC01342 OR4F29 LOC107984841 LOC101928626 CALML6 AGRN TAS1R3 CPTP CDK11A FAM138A WASH7P MIR1302-2 LOC284600 LOC729737 MIB2 LOC105378948 LOC105378947 LOC107985728 ATAD3A CDK11B LOC100506504 MRPL20 MMP23A MXRA8 MIR6808 TMEM240 ANKRD65 LOC107985729 MIR6859-1 SLC35E2B ISG15 LOC100288069 PLEKHN1 LOC105378949 C1orf159 MIR6859-2 TTLL10 AURKAIP1 MIR6727 LOC100132287 LOC100129534 FAM41C LOC105378591 SLC35E2 SKI HES4 FNDC10 RNF223 TNFRSF4 FAAP20 LOC100133331 ATAD3C CPSF3L UBE2J2 PUSL1 FAM87B TMEM88B MORN1 FAM132A PRKCZ MMP23B LOC102725121 B3GALT6
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion SSU72 MXRA8 MIR6808 CCNL2 VWA1 TMEM240 FNDC10 LOC148413 ANKRD65 LOC107985729 LOC102724312 MIR6726 DVL1 ACAP3 MIR429 MIR200B TNFRSF4 LINC01342 SCNN1D TAS1R3 CPTP ATAD3C C1orf159 CPSF3L SDF4 UBE2J2 PUSL1 TNFRSF18 TMEM88B MIB2 FAM132A TTLL10 AURKAIP1 MIR6727 TTLL10-AS1 ATAD3B MMP23B ATAD3A CDK11B MIR200A MRPL20 B3GALT6
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 RNF223 LOC100288175 SAMD11 NOC2L MIR429 MIR200B TNFRSF4 PERM1 LINC01342 ISG15 PLEKHN1 AGRN KLHL17 C1orf159 LOC284600 SDF4 UBE2J2 LOC100130417 FAM87B TNFRSF18 LINC00115 FAM132A TTLL10 TTLL10-AS1 FAM41C LOC105378948 LOC107985728 MIR200A LINC01128 B3GALT6
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 MXRA8 MIR6808 CCNL2 LOC148413 ANKRD65 RNF223 LOC100288175 MIR6726 SAMD11 NOC2L DVL1 ACAP3 MIR429 MIR200B TNFRSF4 PERM1 LINC01342 ISG15 SCNN1D PLEKHN1 AGRN TAS1R3 CPTP KLHL17 C1orf159 LOC284600 CPSF3L SDF4 UBE2J2 LOC100130417 PUSL1 TNFRSF18 TMEM88B FAM132A TTLL10 AURKAIP1 MIR6727 TTLL10-AS1 LOC105378948 LOC107985728 MIR200A MRPL20 B3GALT6
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain C1orf159 SDF4 UBE2J2 RNF223 TNFRSF18 FAM132A TTLL10 TTLL10-AS1 MIR429 MIR200B LOC105378948 TNFRSF4 LINC01342 SCNN1D MIR200A B3GALT6
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MXRA8 MIR6808 RNF223 MIR6726 DVL1 ACAP3 MIR429 MIR200B TNFRSF4 LINC01342 SCNN1D TAS1R3 CPTP C1orf159 CPSF3L SDF4 UBE2J2 PUSL1 TNFRSF18 FAM132A TTLL10 AURKAIP1 MIR6727 TTLL10-AS1 MIR200A B3GALT6
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF4 SDF4 TNFRSF18 B3GALT6 TTLL10
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L SDF4 UBE2J2 PUSL1 TNFRSF18 MIR6726 FAM132A TTLL10 MIR6727 ACAP3 TTLL10-AS1 MIR429 MIR200B TNFRSF4 SCNN1D MIR200A B3GALT6

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