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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940707 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03340602_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain RNF223 C1orf159 LOC107985728 LOC100288175 LOC100130417 SAMD11 HES4 LOC284600 PLEKHN1 ISG15 KLHL17 LOC105378948 PERM1 AGRN NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss GABRD MIR6808 LOC100134822 FAM132A TNFRSF4 MORN1 CCNL2 LOC100129534 LOC105378949 FAM87B LOC100287934 ATAD3B LOC100132287 FAM41C MIR6859-2 LINC01342 SSU72 WASH7P TTLL10-AS1 MXRA8 UBE2J2 SDF4 TNFRSF18 MIR429 FAAP20 TMEM52 GNB1 LOC102725121 CPSF3L LOC100288069 OR4F16 PERM1 CDK11B MTND1P23 ANKRD65 CDK11A LOC148413 C1orf159 LOC100130417 SAMD11 TAS1R3 MTND2P28 LOC284600 LOC105378589 SLC35E2B TTLL10 LOC107984841 FAM138A FNDC10 CFAP74 RNF223 LOC100288175 PRKCZ PUSL1 LOC101928626 HES4 ATAD3A LOC105378592 LOC105378948 MIR6727 MRPL20 LINC00115 LINC01128 MIR1302-2 AURKAIP1 LOC105378947 B3GALT6 NADK MIB2 KLHL17 MIR200A LOC107985729 MIR200B DVL1 MMP23B OR4F5 OR4F29 NOC2L SLC35E2 LOC729737 SKI LOC100506504 ATAD3C MIR6859-1 ISG15 CPTP TMEM240 MMP23A TMEM88B VWA1 DDX11L1 AGRN LOC107985728 MIR6723 LOC102724312 SCNN1D CALML6 PLEKHN1 LOC105378591 ACAP3 LOC100133331 MIR6726
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion RNF223 C1orf159 LOC107985728 LOC100288175 LOC100130417 SAMD11 HES4 LOC284600 PLEKHN1 ISG15 KLHL17 LOC105378948 PERM1 AGRN NOC2L
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC107985728 LOC100130417 SAMD11 PERM1 LOC284600 PLEKHN1 KLHL17 NOC2L
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss SAMD11 NOC2L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain RNF223 LOC100288175 HES4 ISG15 LOC105378948 TNFRSF4 PERM1 AGRN C1orf159 LOC107985728 LOC100130417 SAMD11 FAM41C LOC284600 LINC01342 PLEKHN1 KLHL17 TTLL10-AS1 MIR200A MIR200B SDF4 TNFRSF18 TTLL10 MIR429 NOC2L
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss RNF223 LOC100288175 MIR6808 PUSL1 HES4 ATAD3A FAM132A LOC105378948 TNFRSF4 CCNL2 MIR6727 FAM87B LOC100287934 MRPL20 LINC00115 ATAD3B LINC01128 AURKAIP1 B3GALT6 NADK MIB2 FAM41C LINC01342 SSU72 KLHL17 TTLL10-AS1 MXRA8 MIR200A UBE2J2 LOC107985729 MIR200B SDF4 TNFRSF18 DVL1 MIR429 MMP23B NOC2L SLC35E2 ATAD3C CPSF3L ISG15 LOC100288069 CPTP TMEM240 PERM1 CDK11B MMP23A TMEM88B VWA1 ANKRD65 CDK11A AGRN LOC148413 C1orf159 LOC107985728 LOC100130417 SAMD11 TAS1R3 LOC102724312 LOC284600 SCNN1D PLEKHN1 ACAP3 SLC35E2B MIR6726 TTLL10 FNDC10
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain RNF223 LOC100288175 LOC101928626 HES4 ISG15 LOC105378948 LOC100288069 OR4F16 PERM1 MTND1P23 FAM87B LOC100287934 LINC00115 AGRN C1orf159 LOC107985728 LOC100130417 LINC01128 MIR6723 LOC105378947 SAMD11 MTND2P28 FAM41C LOC284600 PLEKHN1 KLHL17 LOC100133331 LOC107984841 NOC2L
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss RNF223 LOC100288175 HES4 ISG15 FAM132A LOC105378948 TNFRSF4 PERM1 FAM87B LINC00115 AGRN C1orf159 LOC107985728 LOC100130417 LINC01128 SAMD11 B3GALT6 FAM41C LOC284600 LINC01342 PLEKHN1 KLHL17 TTLL10-AS1 MIR200A UBE2J2 MIR200B SDF4 TNFRSF18 TTLL10 MIR429 NOC2L
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain RNF223 C1orf159 LOC100288175 SAMD11 HES4 LINC01342 PLEKHN1 ISG15 KLHL17 LOC105378948 PERM1 AGRN NOC2L
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion RNF223 C1orf159 LOC100288175 SAMD11 HES4 LINC01342 PLEKHN1 ISG15 KLHL17 TTLL10-AS1 LOC105378948 MIR200A TNFRSF4 PERM1 MIR200B SDF4 TNFRSF18 TTLL10 MIR429 AGRN NOC2L
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC107985728 LOC100130417 SAMD11 PERM1 HES4 LOC284600 PLEKHN1 ISG15 KLHL17 AGRN NOC2L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain RNF223 LOC100288175 MIR6808 PUSL1 HES4 CPSF3L ISG15 FAM132A LOC105378948 CPTP TNFRSF4 PERM1 CCNL2 TMEM88B MIR6727 MRPL20 ANKRD65 AGRN LOC148413 C1orf159 LOC107985728 LOC100130417 AURKAIP1 SAMD11 B3GALT6 TAS1R3 LOC284600 SCNN1D LINC01342 PLEKHN1 KLHL17 TTLL10-AS1 MXRA8 ACAP3 MIR200A UBE2J2 MIR200B SDF4 TNFRSF18 MIR6726 TTLL10 DVL1 MIR429 NOC2L
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC107985728 LOC100130417 LINC01128 SAMD11 PERM1 FAM41C HES4 LOC284600 PLEKHN1 KLHL17 NOC2L

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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