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Gene Symbol
CDK11B
Assay Reference Genome
Location

Chr.1:1655181 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03342538_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 984

Gene Name:

 cyclin dependent kinase 11B

Gene Aliases:

 CDC2L1, CDK11, CDK11-p110, CDK11-p46, CDK11-p58, CLK-1, PITSLREA, PK58, p58, p58CDC2L1, p58CLK-1

Location:

 Chr.1:1635226-1659839 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDK11B NM_001291345.1 NP_001278274.1
NM_001787.2 NP_001778.2
NM_033486.2 NP_277021.2
NM_033487.2 NP_277022.1
NM_033489.2 NP_277024.2
NM_033490.2 NP_277025.1
XM_006711065.3 XP_006711128.1
XM_011542490.2 XP_011540792.1
XM_011542491.2 XP_011540793.1
XM_011542492.2 XP_011540794.1
XM_011542493.2 XP_011540795.1
XM_011542494.2 XP_011540796.1
XM_011542495.2 XP_011540797.1
XM_017002925.1 XP_016858414.1
XM_017002926.1 XP_016858415.1
XM_017002927.1 XP_016858416.1
XM_017002928.1 XP_016858417.1
AF067512.1 AAC72077.1
AF067513.1 AAC72078.1
AF067514.1 AAC72079.1
AF067515.1 AAC72080.1
AF067516.1 AAC72081.1
AF067517.1 AAC72082.1
AF174497.1 AAF36538.1
AK000081.1
AK295607.1
AK304679.1
BC009375.2 AAH09375.1
BC104661.1 AAI04662.1
BC139777.1
BC140714.1
BC171773.1
DC295949.1
DC362247.1
DC393302.1
U04816.1 AAA19582.1
U04817.1 AAA19583.1
U04818.1 AAA19584.1
U04824.1 AAA19586.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv5n111 Chr.1:1575421 - 1823403 on Build GRCh38 Deletion FNDC10 MMP23B CDK11A NADK GNB1 SLC35E2B MIB2 SLC35E2 CDK11B MMP23A
dgv8n100 Chr.1:1569349 - 1741152 on Build GRCh38 Loss FNDC10 MMP23B CDK11A SLC35E2B MIB2 SLC35E2 CDK11B SSU72 MMP23A
esv3575582 Chr.1:1624086 - 1721336 on Build GRCh38 Gain MMP23B CDK11A SLC35E2B MIB2 CDK11B MMP23A
esv3550788 Chr.1:1653096 - 1726348 on Build GRCh38 Deletion CDK11A SLC35E2B SLC35E2 CDK11B MMP23A
nsv1160797 Chr.1:1566216 - 1805918 on Build GRCh38 Duplication FNDC10 MMP23B CDK11A NADK GNB1 SLC35E2B MIB2 SLC35E2 CDK11B SSU72 MMP23A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC148413 LOC105378592 LOC102725121 LOC284600 LOC107985728 LOC105378947 LOC105378591 C1orf159 GNB1 TMEM88B CDK11B LOC100129534 DDX11L1 TTLL10-AS1 ISG15 LOC100130417 FAM87B LOC107984841 CPTP CCNL2 TMEM52 MTND2P28 SSU72 AGRN MIR6808 SDF4 UBE2J2 MIR6859-2 MIR6727 LOC105378949 LOC102724312 VWA1 LINC01128 PRKCZ LOC101928626 LOC100134822 FAAP20 LOC100506504 TNFRSF4 PERM1 LOC105378589 LOC729737 MIR200B LOC105378948 ATAD3A LOC100132287 FAM138A WASH7P ATAD3B OR4F5 HES4 LOC100133331 LOC107985729 SCNN1D MMP23B TMEM240 MIR429 SLC35E2 PLEKHN1 FAM41C ATAD3C B3GALT6 DVL1 CALML6 KLHL17 CPSF3L MMP23A OR4F29 NOC2L CDK11A CFAP74 SLC35E2B ACAP3 MIR6859-1 SKI LOC100288175 ANKRD65 LOC100288069 TAS1R3 MIR200A NADK TNFRSF18 MIR6726 FAM132A MXRA8 RNF223 MIR6723 MIB2 MRPL20 MIR1302-2 LINC01342 OR4F16 MTND1P23 LOC100287934 LINC00115 FNDC10 GABRD MORN1 AURKAIP1 PUSL1 TTLL10 SAMD11
esv2760410 Chr.1:1565561 - 1756248 on Build GRCh38 Gain+Loss FNDC10 MMP23B CDK11A NADK SLC35E2B MIB2 SLC35E2 CDK11B SSU72 MMP23A
esv3585007 Chr.1:1647187 - 1714507 on Build GRCh38 Loss CDK11A SLC35E2B CDK11B MMP23A
nsv545017 Chr.1:1615322 - 1663759 on Build GRCh38 Loss MMP23B SLC35E2B MIB2 CDK11B
esv27786 Chr.1:1632502 - 1752267 on Build GRCh38 Gain MMP23B CDK11A NADK SLC35E2B SLC35E2 CDK11B MMP23A
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC148413 LOC284600 HES4 LOC107985728 LOC107985729 SCNN1D MMP23B TMEM240 MIR429 C1orf159 TMEM88B SLC35E2 CDK11B TTLL10-AS1 ISG15 PLEKHN1 LOC100130417 FAM87B FAM41C ATAD3C B3GALT6 DVL1 KLHL17 CPSF3L MMP23A NOC2L CPTP CCNL2 CDK11A SLC35E2B ACAP3 SSU72 AGRN MIR6808 SDF4 LOC100288175 ANKRD65 UBE2J2 LOC100288069 TAS1R3 MIR6727 MIR200A LOC102724312 NADK VWA1 TNFRSF18 MIR6726 FAM132A MXRA8 LINC01128 RNF223 MIB2 MRPL20 TNFRSF4 PERM1 LINC01342 LOC100287934 LINC00115 FNDC10 MIR200B LOC105378948 ATAD3A AURKAIP1 ATAD3B PUSL1 TTLL10 SAMD11
dgv3n67 Chr.1:1653920 - 1735718 on Build GRCh38 Gain CDK11A SLC35E2B SLC35E2 CDK11B MMP23A
nsv545018 Chr.1:1638499 - 1688102 on Build GRCh38 Loss SLC35E2B CDK11B
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC148413 ANKRD65 LOC105378591 LOC105378949 LOC107985729 LOC102724312 MMP23B TMEM240 NADK VWA1 PRKCZ GNB1 TMEM88B MIB2 SLC35E2 CDK11B MRPL20 ATAD3C LOC105378589 CALML6 MMP23A FNDC10 GABRD CCNL2 TMEM52 CDK11A ATAD3A CFAP74 SLC35E2B ATAD3B SSU72

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More Information


Additional Information:

For this assay, SNP(s) [rs113432402] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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