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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1230376 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03350542_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 LINC01342 CPSF3L LOC100288175 B3GALT6 AGRN ACAP3 SCNN1D SDF4 MIR429 FAM132A RNF223 MIR200B CPTP MIR6727 C1orf159 MIR200A TTLL10 UBE2J2 TTLL10-AS1 PUSL1 TNFRSF18 TNFRSF4 LOC105378948 MIR6726
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100130417 ISG15 LOC148413 LINC00115 FAM87B CPSF3L ACAP3 SCNN1D SDF4 MIR429 ATAD3B FAM132A MXRA8 RNF223 CPTP MIR6727 LINC01128 FNDC10 AURKAIP1 LOC100288069 TTLL10-AS1 CCNL2 TMEM88B MIB2 LOC105378948 KLHL17 LOC107985728 ATAD3C MIR6726 MRPL20 TAS1R3 LOC100287934 LINC01342 PLEKHN1 LOC100288175 NADK B3GALT6 AGRN VWA1 ANKRD65 SSU72 LOC102724312 SLC35E2 DVL1 MIR200B SLC35E2B TMEM240 MMP23A C1orf159 MIR200A NOC2L TTLL10 MMP23B SAMD11 UBE2J2 PUSL1 CDK11A TNFRSF18 TNFRSF4 PERM1 ATAD3A CDK11B HES4 MIR6808 LOC284600 LOC107985729 FAM41C
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss FAM132A B3GALT6 UBE2J2 SDF4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378947 LOC100130417 MIR6723 MIR1302-2 FAM138A ACAP3 SDF4 GABRD ATAD3B LINC01128 AURKAIP1 LOC105378591 OR4F5 CCNL2 MIB2 MTND2P28 KLHL17 ATAD3C TMEM52 LOC107984841 MRPL20 FAAP20 MORN1 LOC100288175 NADK VWA1 LOC102725121 ANKRD65 SLC35E2B CALML6 LOC100134822 OR4F16 LOC105378949 MIR200A PRKCZ LOC100132287 NOC2L LOC105378589 UBE2J2 GNB1 LOC100133331 CDK11A MIR6859-2 OR4F29 ATAD3A HES4 MIR6808 LOC107985729 FAM41C ISG15 LOC148413 LINC00115 MTND1P23 FAM87B CPSF3L SCNN1D MIR429 LOC729737 FAM132A MXRA8 RNF223 CPTP MIR6727 LOC100129534 FNDC10 LOC100288069 WASH7P TTLL10-AS1 TMEM88B LOC105378948 LOC101928626 LOC107985728 MIR6859-1 MIR6726 CFAP74 TAS1R3 LOC100287934 LINC01342 PLEKHN1 B3GALT6 AGRN DDX11L1 SSU72 LOC102724312 SLC35E2 DVL1 MIR200B LOC100506504 TMEM240 MMP23A C1orf159 TTLL10 MMP23B SAMD11 PUSL1 TNFRSF18 LOC105378592 TNFRSF4 PERM1 SKI CDK11B LOC284600
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TAS1R3 LOC148413 LINC01342 CPSF3L B3GALT6 VWA1 ACAP3 SCNN1D ANKRD65 SDF4 SSU72 LOC102724312 MIR429 ATAD3B FAM132A MXRA8 DVL1 MIR200B CPTP MIR6727 TMEM240 C1orf159 MIR200A FNDC10 AURKAIP1 TTLL10 MMP23B UBE2J2 TTLL10-AS1 PUSL1 CCNL2 TMEM88B TNFRSF18 MIB2 TNFRSF4 ATAD3C ATAD3A CDK11B MIR6726 MRPL20 MIR6808 LOC107985729
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100130417 ISG15 LINC01342 PLEKHN1 LINC00115 FAM87B LOC100288175 B3GALT6 AGRN SDF4 MIR429 FAM132A RNF223 MIR200B LINC01128 C1orf159 MIR200A NOC2L TTLL10 SAMD11 UBE2J2 TTLL10-AS1 TNFRSF18 TNFRSF4 LOC105378948 KLHL17 PERM1 LOC107985728 HES4 LOC284600 FAM41C
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100130417 TAS1R3 ISG15 LOC148413 LINC01342 PLEKHN1 CPSF3L LOC100288175 B3GALT6 AGRN ACAP3 SCNN1D ANKRD65 SDF4 MIR429 FAM132A MXRA8 RNF223 DVL1 MIR200B CPTP MIR6727 C1orf159 MIR200A AURKAIP1 NOC2L TTLL10 SAMD11 UBE2J2 TTLL10-AS1 PUSL1 CCNL2 TMEM88B TNFRSF18 TNFRSF4 LOC105378948 KLHL17 PERM1 LOC107985728 MIR6726 HES4 MRPL20 MIR6808 LOC284600
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 C1orf159 MIR200A TTLL10 B3GALT6 UBE2J2 SCNN1D TTLL10-AS1 SDF4 MIR429 TNFRSF18 TNFRSF4 LOC105378948 FAM132A RNF223 MIR200B
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TAS1R3 LINC01342 CPSF3L B3GALT6 ACAP3 SCNN1D SDF4 MIR429 FAM132A MXRA8 RNF223 DVL1 MIR200B CPTP MIR6727 C1orf159 MIR200A AURKAIP1 TTLL10 UBE2J2 TTLL10-AS1 PUSL1 TNFRSF18 TNFRSF4 MIR6726 MIR6808
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TNFRSF4 TTLL10 B3GALT6 TTLL10-AS1 SDF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200A CPSF3L TTLL10 B3GALT6 UBE2J2 ACAP3 SCNN1D TTLL10-AS1 SDF4 PUSL1 MIR429 TNFRSF18 TNFRSF4 FAM132A MIR200B MIR6726 MIR6727

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More Information


Additional Information:

For this assay, SNP(s) [rs368245192] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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