Hs03352784_cn

• Gene Symbol: SAMD11
• Assay Reference Genome Location: Chr.1:935108 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 148398
• Gene Name: sterile alpha motif domain containing 11
• Gene Aliases: MRS
• Location: Chr.1:925741-944581 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAMD11	NM_152486.2			NP_689699.2
	CN293867.1
	CN342795.1
	JX093066.1
	JX093067.1
	JX093068.1
	JX093069.1
	JX093070.1
	JX093071.1
	JX093072.1
	JX093073.1
	JX093074.1
	JX093075.1
	JX093076.1
	JX093077.1
	JX093078.1
	JX093079.1
	JX093080.1
	JX093081.1
	JX093082.1
	JX093083.1
	JX093084.1
	JX093085.1
	JX093086.1
	JX093087.1
	JX093088.1
	JX093089.1
	JX093090.1
	JX093091.1
	JX093092.1
	JX093093.1
	JX093094.1
	JX093095.1
	JX093096.1
	JX093097.1
	JX093098.1
	JX093099.1
	JX093100.1
	JX093101.1
	JX093102.1
	JX093103.1
	JX093104.1
	JX093105.1
	JX093106.1
	JX093107.1
	JX093108.1
	JX093109.1
	JX093110.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv14n54	Chr.1:934063 - 938178 on Build GRCh38	Gain	SAMD11
esv2762302	Chr.1:914637 - 1106320 on Build GRCh38	Gain	NOC2L LOC107985728 HES4 AGRN LOC100288175 C1orf159 KLHL17 LOC100130417 LOC284600 LOC105378948 SAMD11 RNF223 ISG15 PERM1 PLEKHN1
nsv544928	Chr.1:934223 - 935265 on Build GRCh38	Gain	SAMD11
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	ATAD3C C1orf159 MIR6859-1 GNB1 ANKRD65 LOC105378949 LOC100132287 FAM41C LOC729737 LOC102724312 OR4F16 MIR6726 HES4 LINC01342 SLC35E2B TNFRSF4 SAMD11 TAS1R3 LOC105378589 ACAP3 MTND1P23 TMEM240 VWA1 FAM132A MIB2 PRKCZ SKI CDK11A KLHL17 FAM138A CFAP74 SSU72 ISG15 LOC100133331 ATAD3B PLEKHN1 DVL1 CALML6 LOC100288069 FAM87B OR4F29 UBE2J2 DDX11L1 LOC107984841 CPTP MMP23A LOC148413 LOC105378948 MIR6859-2 MIR6727 ATAD3A NOC2L FAAP20 LOC105378591 TTLL10-AS1 LOC100506504 RNF223 LOC102725121 PERM1 MTND2P28 GABRD MIR6808 LOC105378592 LOC107985728 AURKAIP1 TMEM52 WASH7P MRPL20 LOC100129534 MIR200B LOC101928626 MORN1 CCNL2 MIR200A SCNN1D TTLL10 OR4F5 SLC35E2 MMP23B MIR6723 FNDC10 LOC284600 TMEM88B LOC100287934 LOC105378947 LINC01128 TNFRSF18 MIR429 AGRN NADK LINC00115 LOC100288175 MXRA8 B3GALT6 LOC100134822 CDK11B CPSF3L LOC100130417 SDF4 PUSL1 MIR1302-2 LOC107985729
dgv10n54	Chr.1:929558 - 935265 on Build GRCh38	Gain+Loss	SAMD11
nsv950451	Chr.1:899421 - 1094520 on Build GRCh38	Deletion	NOC2L LOC107985728 HES4 AGRN LOC100288175 C1orf159 KLHL17 LOC100130417 LOC284600 LOC105378948 SAMD11 RNF223 ISG15 PERM1 PLEKHN1
nsv509035	Chr.1:891406 - 985724 on Build GRCh38	Insertion	NOC2L LOC100130417 LOC284600 SAMD11 LOC107985728 PERM1 KLHL17 PLEKHN1
nsv511670	Chr.1:933871 - 935480 on Build GRCh38	Loss	SAMD11
dgv8n54	Chr.1:925754 - 943937 on Build GRCh38	Loss	SAMD11
nsv544932	Chr.1:934429 - 938178 on Build GRCh38	Loss	SAMD11
nsv428334	Chr.1:874371 - 1220569 on Build GRCh38	Gain	NOC2L C1orf159 KLHL17 TTLL10-AS1 LOC284600 RNF223 ISG15 PERM1 FAM41C PLEKHN1 TNFRSF18 LOC107985728 MIR429 HES4 AGRN LINC01342 MIR200B LOC100288175 TNFRSF4 LOC100130417 SDF4 LOC105378948 SAMD11 MIR200A TTLL10
dgv5n100	Chr.1:585989 - 1114424 on Build GRCh38	Gain	NOC2L MIR6723 C1orf159 KLHL17 LOC284600 LOC100287934 RNF223 ISG15 LOC100133331 PERM1 FAM41C LOC105378947 LINC01128 MTND2P28 PLEKHN1 OR4F16 LOC107985728 HES4 AGRN LOC100288069 LINC00115 FAM87B LOC100288175 LOC101928626 LOC107984841 LOC100130417 LOC105378948 SAMD11 MTND1P23
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	NOC2L ATAD3C C1orf159 TTLL10-AS1 ANKRD65 RNF223 PERM1 FAM41C LOC102724312 MIR6808 LOC107985728 MIR6726 AURKAIP1 HES4 MRPL20 LINC01342 MIR200B SLC35E2B TNFRSF4 SAMD11 TAS1R3 CCNL2 MIR200A SCNN1D TTLL10 ACAP3 TMEM240 VWA1 SLC35E2 MMP23B FAM132A MIB2 CDK11A KLHL17 FNDC10 LOC284600 TMEM88B LOC100287934 SSU72 ISG15 LINC01128 ATAD3B PLEKHN1 TNFRSF18 MIR429 DVL1 AGRN LOC100288069 NADK LINC00115 FAM87B LOC100288175 MXRA8 B3GALT6 UBE2J2 CPTP CDK11B MMP23A CPSF3L LOC148413 LOC100130417 SDF4 LOC105378948 PUSL1 MIR6727 LOC107985729 ATAD3A
dgv1n111	Chr.1:690090 - 939522 on Build GRCh38	Duplication	OR4F16 LOC107985728 LOC100288069 LINC00115 FAM87B LOC107984841 LOC100130417 LOC284600 SAMD11 LOC100287934 LOC100133331 FAM41C LINC01128
nsv517709	Chr.1:817186 - 1275912 on Build GRCh38	Gain+Loss	NOC2L FAM132A C1orf159 KLHL17 TTLL10-AS1 LOC284600 RNF223 ISG15 PERM1 FAM41C LINC01128 PLEKHN1 TNFRSF18 LOC107985728 MIR429 HES4 AGRN LINC00115 LINC01342 FAM87B MIR200B LOC100288175 B3GALT6 UBE2J2 TNFRSF4 LOC100130417 SDF4 LOC105378948 SAMD11 MIR200A TTLL10
nsv1074938	Chr.1:933719 - 935120 on Build GRCh38	Deletion	SAMD11
dgv3n111	Chr.1:783283 - 939522 on Build GRCh38	Duplication	LOC100130417 LOC284600 SAMD11 LOC107985728 LOC100287934 LINC00115 FAM41C FAM87B LINC01128
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	NOC2L FAM132A C1orf159 KLHL17 TTLL10-AS1 LOC284600 TMEM88B ANKRD65 RNF223 ISG15 PERM1 PLEKHN1 TNFRSF18 MIR6808 LOC107985728 MIR429 MIR6726 DVL1 AURKAIP1 HES4 AGRN MRPL20 LINC01342 MIR200B LOC100288175 MXRA8 B3GALT6 UBE2J2 TNFRSF4 CPTP CPSF3L LOC148413 LOC100130417 SDF4 LOC105378948 PUSL1 SAMD11 TAS1R3 CCNL2 MIR6727 MIR200A SCNN1D TTLL10 ACAP3
nsv544895	Chr.1:917392 - 1054900 on Build GRCh38	Loss	NOC2L LOC100130417 LOC284600 SAMD11 LOC107985728 ISG15 HES4 AGRN PERM1 KLHL17 PLEKHN1
nsv832980	Chr.1:848279 - 1007037 on Build GRCh38	Gain	NOC2L LOC100130417 LOC284600 SAMD11 LOC107985728 HES4 PERM1 FAM41C KLHL17 LINC01128 PLEKHN1
nsv544898	Chr.1:924665 - 943937 on Build GRCh38	Gain	SAMD11 LOC107985728
nsv544924	Chr.1:934170 - 938178 on Build GRCh38	Gain+Loss	SAMD11

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein