Hs03352784_cn

• Gene Symbol: SAMD11
• Assay Reference Genome Location: Chr.1:935108 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 148398
• Gene Name: sterile alpha motif domain containing 11
• Gene Aliases: MRS
• Location: Chr.1:925741-944581 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAMD11	NM_152486.2			NP_689699.2
	CN293867.1
	CN342795.1
	JX093066.1
	JX093067.1
	JX093068.1
	JX093069.1
	JX093070.1
	JX093071.1
	JX093072.1
	JX093073.1
	JX093074.1
	JX093075.1
	JX093076.1
	JX093077.1
	JX093078.1
	JX093079.1
	JX093080.1
	JX093081.1
	JX093082.1
	JX093083.1
	JX093084.1
	JX093085.1
	JX093086.1
	JX093087.1
	JX093088.1
	JX093089.1
	JX093090.1
	JX093091.1
	JX093092.1
	JX093093.1
	JX093094.1
	JX093095.1
	JX093096.1
	JX093097.1
	JX093098.1
	JX093099.1
	JX093100.1
	JX093101.1
	JX093102.1
	JX093103.1
	JX093104.1
	JX093105.1
	JX093106.1
	JX093107.1
	JX093108.1
	JX093109.1
	JX093110.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13n54	Chr.1:934063 - 935265 on Build GRCh38	Gain+Loss	SAMD11
esv2762302	Chr.1:914637 - 1106320 on Build GRCh38	Gain	LOC284600 LOC100288175 LOC107985728 LOC105378948 KLHL17 NOC2L HES4 PERM1 LOC100130417 RNF223 AGRN C1orf159 SAMD11 PLEKHN1 ISG15
nsv544928	Chr.1:934223 - 935265 on Build GRCh38	Gain	SAMD11
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	GNB1 OR4F16 TMEM52 SDF4 MIR6859-1 TNFRSF18 MIR6808 MTND1P23 SSU72 OR4F5 LOC107985729 RNF223 C1orf159 VWA1 LOC102724312 SLC35E2 ACAP3 ATAD3B LOC100132287 B3GALT6 TTLL10 MMP23A CFAP74 LOC729737 PLEKHN1 FAM132A LOC284600 LOC105378589 MIR429 OR4F29 HES4 UBE2J2 LOC148413 LOC107984841 LOC105378591 LOC100130417 AGRN GABRD FAAP20 ISG15 NADK MRPL20 MIR200B LOC105378947 MIR6727 CPTP PRKCZ MIR6726 DDX11L1 SAMD11 SLC35E2B ANKRD65 LOC100129534 LINC01342 TMEM88B KLHL17 NOC2L WASH7P MIR6723 MTND2P28 SCNN1D MXRA8 ATAD3C MIB2 TAS1R3 LINC01128 FAM87B DVL1 CPSF3L AURKAIP1 TNFRSF4 LOC105378592 LOC102725121 LOC100288069 CDK11B FNDC10 LOC100288175 FAM138A LOC107985728 LOC105378948 LOC101928626 LOC100287934 LOC100506504 MIR6859-2 TTLL10-AS1 MORN1 LINC00115 ATAD3A FAM41C PUSL1 LOC105378949 LOC100133331 PERM1 SKI CALML6 MIR200A MMP23B LOC100134822 MIR1302-2 CDK11A CCNL2 TMEM240
dgv10n54	Chr.1:929558 - 935265 on Build GRCh38	Gain+Loss	SAMD11
nsv950451	Chr.1:899421 - 1094520 on Build GRCh38	Deletion	LOC284600 LOC100288175 LOC107985728 LOC105378948 KLHL17 NOC2L HES4 PERM1 LOC100130417 RNF223 AGRN C1orf159 SAMD11 PLEKHN1 ISG15
nsv511670	Chr.1:933871 - 935480 on Build GRCh38	Loss	SAMD11
nsv509035	Chr.1:891406 - 985724 on Build GRCh38	Insertion	LOC284600 LOC107985728 LOC100130417 KLHL17 NOC2L SAMD11 PLEKHN1 PERM1
dgv9n54	Chr.1:925754 - 952840 on Build GRCh38	Loss	NOC2L SAMD11
dgv16n54	Chr.1:934429 - 935265 on Build GRCh38	Loss	SAMD11
nsv428334	Chr.1:874371 - 1220569 on Build GRCh38	Gain	LOC284600 LOC100288175 LINC01342 LOC107985728 LOC105378948 KLHL17 NOC2L MIR429 SDF4 TNFRSF18 HES4 LOC100130417 RNF223 AGRN C1orf159 TTLL10-AS1 ISG15 MIR200B FAM41C TNFRSF4 PERM1 TTLL10 SAMD11 PLEKHN1 MIR200A
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	LINC01342 TMEM88B KLHL17 NOC2L SDF4 TNFRSF18 MIR6808 SSU72 SCNN1D MXRA8 LOC107985729 RNF223 ATAD3C C1orf159 MIB2 TAS1R3 LINC01128 VWA1 LOC102724312 FAM87B SLC35E2 DVL1 ACAP3 CPSF3L AURKAIP1 ATAD3B TNFRSF4 B3GALT6 TTLL10 MMP23A LOC100288069 PLEKHN1 CDK11B FNDC10 FAM132A LOC284600 LOC100288175 LOC107985728 LOC105378948 MIR429 HES4 UBE2J2 LOC148413 LOC100287934 LOC100130417 AGRN TTLL10-AS1 ISG15 LINC00115 NADK MRPL20 ATAD3A MIR200B FAM41C PUSL1 MIR6727 PERM1 CPTP MIR6726 SAMD11 MIR200A MMP23B CDK11A CCNL2 SLC35E2B ANKRD65 TMEM240
dgv5n100	Chr.1:585989 - 1114424 on Build GRCh38	Gain	LOC284600 LOC100288175 LOC107985728 LOC105378948 OR4F16 KLHL17 NOC2L MIR6723 HES4 LOC101928626 MTND1P23 MTND2P28 LOC107984841 LOC100287934 LOC100130417 RNF223 AGRN C1orf159 LINC01128 FAM87B ISG15 LINC00115 FAM41C LOC105378947 LOC100133331 PERM1 SAMD11 LOC100288069 PLEKHN1
nsv517709	Chr.1:817186 - 1275912 on Build GRCh38	Gain+Loss	LOC284600 LOC100288175 LINC01342 LOC107985728 LOC105378948 KLHL17 NOC2L MIR429 SDF4 TNFRSF18 HES4 UBE2J2 LOC100130417 RNF223 AGRN C1orf159 TTLL10-AS1 LINC01128 FAM87B ISG15 LINC00115 MIR200B FAM41C TNFRSF4 B3GALT6 PERM1 TTLL10 SAMD11 PLEKHN1 MIR200A FAM132A
dgv1n111	Chr.1:690090 - 939522 on Build GRCh38	Duplication	LINC00115 LOC284600 LOC107985728 OR4F16 FAM41C LOC100133331 LOC107984841 LOC100287934 LOC100130417 SAMD11 LOC100288069 LINC01128 FAM87B
nsv1074938	Chr.1:933719 - 935120 on Build GRCh38	Deletion	SAMD11
dgv3n111	Chr.1:783283 - 939522 on Build GRCh38	Duplication	LINC00115 LOC100287934 LOC284600 LOC107985728 LOC100130417 SAMD11 LINC01128 FAM41C FAM87B
nsv544895	Chr.1:917392 - 1054900 on Build GRCh38	Loss	LOC284600 LOC107985728 LOC100130417 AGRN KLHL17 NOC2L SAMD11 PLEKHN1 HES4 ISG15 PERM1
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	LOC284600 LOC100288175 LINC01342 LOC107985728 LOC105378948 TMEM88B KLHL17 NOC2L MIR429 SDF4 TNFRSF18 HES4 MIR6808 UBE2J2 SCNN1D LOC148413 MXRA8 LOC100130417 RNF223 AGRN C1orf159 TAS1R3 TTLL10-AS1 ISG15 DVL1 ACAP3 CPSF3L AURKAIP1 MRPL20 MIR200B TNFRSF4 PUSL1 B3GALT6 MIR6727 PERM1 CPTP TTLL10 MIR6726 SAMD11 PLEKHN1 MIR200A CCNL2 ANKRD65 FAM132A
nsv544898	Chr.1:924665 - 943937 on Build GRCh38	Gain	LOC107985728 SAMD11
nsv832980	Chr.1:848279 - 1007037 on Build GRCh38	Gain	LOC284600 LOC107985728 LOC100130417 KLHL17 NOC2L SAMD11 PLEKHN1 LINC01128 FAM41C HES4 PERM1
nsv544924	Chr.1:934170 - 938178 on Build GRCh38	Gain+Loss	SAMD11

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein