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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1219447 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03356710_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 5 2128 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1 3 1150
AK027277.1 BAB55012.1
AK055331.1 1 847
AK075352.1 BAC11563.1
AK126927.1 1 1905
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss B3GALT6 SDF4 UBE2J2 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC729737 ATAD3A LOC107985728 LOC105378591 WASH7P ATAD3C LOC101928626 LOC105378949 PLEKHN1 ATAD3B TMEM52 OR4F29 MIR6726 MIR429 MTND1P23 MMP23A LOC100288069 OR4F16 TNFRSF4 CALML6 LOC105378592 PUSL1 CDK11A FAM132A TNFRSF18 MIR6727 TTLL10-AS1 VWA1 TAS1R3 NADK NOC2L LOC100130417 PRKCZ LOC105378947 MIR6808 C1orf159 AURKAIP1 HES4 CFAP74 OR4F5 LOC105378589 MXRA8 SSU72 LOC148413 MIR6859-2 LOC100132287 LINC01128 MIB2 B3GALT6 FAM87B DDX11L1 LOC107985729 CPTP LOC100506504 LOC100288175 MIR200A LOC102724312 LINC00115 LINC01342 LOC105378948 UBE2J2 TMEM240 MIR6723 FAM41C MORN1 MRPL20 KLHL17 CCNL2 RNF223 SKI MIR200B LOC102725121 CPSF3L TTLL10 SCNN1D GABRD SAMD11 SLC35E2B SLC35E2 MMP23B LOC100287934 CDK11B SDF4 ISG15 LOC100129534 PERM1 DVL1 MIR1302-2 FAAP20 ANKRD65 FAM138A ACAP3 MTND2P28 LOC107984841 MIR6859-1 AGRN TMEM88B GNB1 LOC284600 LOC100133331 FNDC10 LOC100134822
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 LINC01342 TNFRSF4 LOC105378948 RNF223 UBE2J2 MIR200B C1orf159 FAM132A B3GALT6 SDF4 TNFRSF18 TTLL10 SCNN1D MIR429 MIR200A
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TTLL10-AS1 TAS1R3 LINC01342 UBE2J2 MIR6808 C1orf159 SDF4 AURKAIP1 MIR6726 MIR429 MXRA8 DVL1 ACAP3 TNFRSF4 RNF223 MIR200B PUSL1 FAM132A B3GALT6 TNFRSF18 MIR6727 CPSF3L TTLL10 SCNN1D CPTP MIR200A
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 B3GALT6 SDF4 TNFRSF18 TNFRSF4 TTLL10
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10-AS1 TAS1R3 LINC01342 LOC105378948 UBE2J2 C1orf159 SDF4 MIR6726 MIR429 ACAP3 TNFRSF4 RNF223 MIR200B PUSL1 FAM132A AGRN B3GALT6 TNFRSF18 MIR6727 CPSF3L TTLL10 SCNN1D CPTP LOC100288175 MIR200A
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TTLL10-AS1 LINC01342 LOC105378948 LOC107985728 NOC2L LOC100130417 C1orf159 PLEKHN1 FAM41C SDF4 HES4 ISG15 KLHL17 PERM1 MIR429 TNFRSF4 RNF223 MIR200B AGRN TNFRSF18 LOC284600 TTLL10 SAMD11 LOC100288175 MIR200A
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC102724312 LINC00115 LINC01342 ATAD3A LOC105378948 LOC107985728 ATAD3C UBE2J2 TMEM240 PLEKHN1 ATAD3B FAM41C MRPL20 KLHL17 MIR6726 MIR429 MMP23A LOC100288069 CCNL2 TNFRSF4 RNF223 MIR200B PUSL1 CDK11A FAM132A TNFRSF18 MIR6727 CPSF3L TTLL10 SCNN1D SAMD11 SLC35E2B SLC35E2 TTLL10-AS1 VWA1 MMP23B LOC100287934 TAS1R3 NADK NOC2L CDK11B LOC100130417 MIR6808 C1orf159 SDF4 AURKAIP1 HES4 ISG15 PERM1 MXRA8 DVL1 ANKRD65 SSU72 LOC148413 ACAP3 LINC01128 MIB2 AGRN B3GALT6 TMEM88B FAM87B LOC284600 LOC107985729 FNDC10 CPTP LOC100288175 MIR200A
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TTLL10-AS1 VWA1 MMP23B LOC102724312 TAS1R3 LINC01342 ATAD3A CDK11B ATAD3C UBE2J2 TMEM240 MIR6808 C1orf159 ATAD3B SDF4 AURKAIP1 MRPL20 MIR6726 MIR429 MXRA8 DVL1 ANKRD65 CCNL2 SSU72 LOC148413 ACAP3 TNFRSF4 MIR200B PUSL1 MIB2 FAM132A B3GALT6 TNFRSF18 TMEM88B MIR6727 CPSF3L LOC107985729 TTLL10 SCNN1D FNDC10 CPTP MIR200A
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TTLL10-AS1 LINC00115 LINC01342 LOC105378948 LOC107985728 NOC2L LOC100130417 UBE2J2 C1orf159 PLEKHN1 FAM41C SDF4 HES4 ISG15 KLHL17 PERM1 MIR429 TNFRSF4 RNF223 MIR200B LINC01128 FAM132A AGRN B3GALT6 TNFRSF18 FAM87B LOC284600 TTLL10 SAMD11 LOC100288175 MIR200A
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TTLL10-AS1 LINC01342 TNFRSF4 LOC105378948 RNF223 NOC2L MIR200B C1orf159 PLEKHN1 AGRN SDF4 TNFRSF18 HES4 ISG15 KLHL17 PERM1 TTLL10 MIR429 SAMD11 LOC100288175 MIR200A
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TTLL10-AS1 TAS1R3 LINC01342 LOC105378948 LOC107985728 NOC2L LOC100130417 UBE2J2 MIR6808 C1orf159 PLEKHN1 SDF4 AURKAIP1 HES4 MRPL20 ISG15 KLHL17 PERM1 MIR6726 MIR429 MXRA8 DVL1 ANKRD65 CCNL2 LOC148413 ACAP3 TNFRSF4 RNF223 MIR200B PUSL1 FAM132A AGRN B3GALT6 TNFRSF18 TMEM88B LOC284600 MIR6727 CPSF3L TTLL10 SCNN1D CPTP SAMD11 LOC100288175 MIR200A
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 ACAP3 TNFRSF4 UBE2J2 MIR200B PUSL1 FAM132A B3GALT6 SDF4 TNFRSF18 MIR6727 CPSF3L TTLL10 SCNN1D MIR6726 MIR429 MIR200A

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