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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:938565 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03358969_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain C1orf159 LOC284600 NOC2L RNF223 LOC100288175 HES4 PERM1 AGRN KLHL17 LOC100130417 ISG15 PLEKHN1 LOC107985728 LOC105378948 SAMD11
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC102724312 OR4F29 LOC100288175 ANKRD65 DVL1 CPSF3L CCNL2 LOC100133331 SLC35E2B AURKAIP1 ISG15 SLC35E2 MIB2 TNFRSF4 ATAD3A LINC01128 LOC105378947 LOC105378592 MIR6727 FAM87B MMP23B TAS1R3 LOC105378591 MTND1P23 CDK11A LOC102725121 MIR429 NOC2L RNF223 LOC100134822 PUSL1 TTLL10-AS1 TMEM240 LINC00115 TMEM88B LOC100506504 PRKCZ LOC284600 CALML6 FAM138A FAAP20 B3GALT6 PERM1 FAM132A LOC101928626 CPTP LINC01342 LOC729737 GNB1 MIR200B TNFRSF18 FNDC10 OR4F5 MIR200A VWA1 LOC105378948 LOC100287934 SAMD11 LOC100129534 ATAD3C TTLL10 FAM41C SCNN1D MIR1302-2 ATAD3B NADK LOC107984841 HES4 MTND2P28 LOC100288069 MXRA8 ACAP3 AGRN LOC107985729 LOC100130417 GABRD PLEKHN1 LOC107985728 MIR6723 MIR6726 SDF4 MORN1 MMP23A WASH7P LOC105378589 KLHL17 CFAP74 CDK11B UBE2J2 SSU72 C1orf159 MRPL20 MIR6859-1 LOC105378949 SKI DDX11L1 OR4F16 MIR6859-2 LOC148413 TMEM52 LOC100132287 MIR6808
esv3584987 Chr.1:938011 - 938662 on Build GRCh38 Loss SAMD11
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion C1orf159 LOC284600 NOC2L RNF223 LOC100288175 HES4 PERM1 AGRN KLHL17 LOC100130417 ISG15 PLEKHN1 LOC107985728 LOC105378948 SAMD11
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PERM1 KLHL17 LOC284600 LOC100130417 NOC2L PLEKHN1 LOC107985728 SAMD11
esv2663451 Chr.1:938037 - 938669 on Build GRCh38 Deletion SAMD11
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF18 NOC2L RNF223 LOC100288175 MIR200A TTLL10-AS1 KLHL17 ISG15 LOC105378948 SAMD11 TTLL10 C1orf159 TNFRSF4 FAM41C LOC284600 HES4 PERM1 AGRN LINC01342 LOC100130417 MIR200B PLEKHN1 LOC107985728 MIR429 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC102724312 TNFRSF18 FNDC10 LOC100288175 ANKRD65 DVL1 MIR200A CPSF3L VWA1 CCNL2 SLC35E2B AURKAIP1 ISG15 SLC35E2 LOC105378948 LOC100287934 SAMD11 MIB2 ATAD3C TTLL10 TNFRSF4 FAM41C ATAD3A SCNN1D LINC01128 ATAD3B NADK MIR6727 FAM87B MMP23B HES4 LOC100288069 MXRA8 ACAP3 TAS1R3 AGRN LOC107985729 LOC100130417 CDK11A PLEKHN1 LOC107985728 MIR429 MIR6726 SDF4 NOC2L MMP23A RNF223 PUSL1 TTLL10-AS1 TMEM240 LINC00115 KLHL17 TMEM88B CDK11B UBE2J2 SSU72 C1orf159 MRPL20 LOC284600 B3GALT6 PERM1 FAM132A LOC148413 CPTP LINC01342 MIR200B MIR6808
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain NOC2L RNF223 LOC100288175 LINC00115 LOC100133331 KLHL17 ISG15 LOC105378948 LOC100287934 SAMD11 C1orf159 FAM41C LOC284600 LINC01128 LOC107984841 LOC105378947 FAM87B HES4 MTND2P28 LOC100288069 PERM1 OR4F16 MTND1P23 AGRN LOC101928626 LOC100130417 PLEKHN1 LOC107985728 MIR6723
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF18 NOC2L RNF223 LOC100288175 MIR200A TTLL10-AS1 LINC00115 KLHL17 ISG15 LOC105378948 SAMD11 UBE2J2 TTLL10 C1orf159 TNFRSF4 FAM41C LOC284600 LINC01128 FAM87B HES4 B3GALT6 PERM1 FAM132A AGRN LINC01342 LOC100130417 MIR200B PLEKHN1 LOC107985728 MIR429 SDF4
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication FAM41C LOC284600 LINC01128 LOC107984841 FAM87B LOC100288069 OR4F16 LINC00115 LOC100133331 LOC100130417 LOC107985728 LOC100287934 SAMD11
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LINC00115 FAM41C LOC284600 LINC01128 LOC100130417 FAM87B LOC107985728 LOC100287934 SAMD11
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss PERM1 AGRN KLHL17 LOC284600 LOC100130417 NOC2L ISG15 PLEKHN1 LOC107985728 HES4 SAMD11
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TNFRSF18 NOC2L RNF223 LOC100288175 ANKRD65 DVL1 MIR200A PUSL1 CPSF3L TTLL10-AS1 CCNL2 KLHL17 TMEM88B AURKAIP1 ISG15 LOC105378948 SAMD11 UBE2J2 TTLL10 C1orf159 TNFRSF4 MRPL20 SCNN1D LOC284600 MIR6727 HES4 B3GALT6 MXRA8 PERM1 ACAP3 TAS1R3 FAM132A AGRN LOC148413 CPTP LINC01342 LOC100130417 MIR200B PLEKHN1 LOC107985728 MIR6808 MIR429 MIR6726 SDF4
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain PERM1 FAM41C KLHL17 LOC284600 LINC01128 LOC100130417 NOC2L PLEKHN1 LOC107985728 HES4 SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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