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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1228986 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03359485_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain SDF4 B3GALT6
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication FAM132A MIR200B TNFRSF18 AGRN MIR429 CPSF3L MIR6727 TTLL10-AS1 C1orf159 CPTP MIR6726 RNF223 MIR200A LINC01342 B3GALT6 TNFRSF4 TTLL10 UBE2J2 SDF4 TAS1R3 ACAP3 PUSL1 LOC100288175 SCNN1D LOC105378948
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss FAM132A TNFRSF18 MMP23B MMP23A AGRN MIR429 FAM87B MIR6727 LINC00115 PERM1 CPTP MIR6726 MIR200A B3GALT6 MRPL20 AURKAIP1 LOC100130417 ATAD3C ATAD3A LOC107985728 MXRA8 MIB2 TTLL10 DVL1 TAS1R3 ACAP3 PUSL1 PLEKHN1 SCNN1D CCNL2 LOC107985729 LOC105378948 FAM41C SLC35E2B SSU72 ISG15 MIR200B VWA1 CPSF3L LOC284600 TTLL10-AS1 SLC35E2 C1orf159 NADK RNF223 HES4 LINC01342 CDK11B FNDC10 LINC01128 TNFRSF4 CDK11A TMEM240 ANKRD65 LOC148413 UBE2J2 NOC2L LOC102724312 LOC100288069 SDF4 TMEM88B LOC100288175 MIR6808 SAMD11 ATAD3B LOC100287934 KLHL17
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss FAM132A SDF4 B3GALT6 UBE2J2
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM132A TNFRSF18 MMP23B AGRN MIR429 FAM87B MIR6727 LOC100133331 LINC00115 PRKCZ PERM1 MIR6726 AURKAIP1 ATAD3A OR4F16 MXRA8 TTLL10 SKI LOC105378949 DVL1 TAS1R3 LOC105378589 ACAP3 PLEKHN1 SCNN1D MIR1302-2 FAM41C LOC105378592 SLC35E2B VWA1 GNB1 LOC105378947 NADK RNF223 HES4 WASH7P LINC01342 LOC107984841 DDX11L1 TNFRSF4 LOC102725121 MIR6723 ANKRD65 LOC148413 LOC102724312 SDF4 TMEM88B LOC100288175 SAMD11 ATAD3B LOC105378591 MORN1 MTND1P23 MMP23A MTND2P28 CPTP MIR200A B3GALT6 MRPL20 LOC100130417 ATAD3C LOC107985728 TMEM52 MIB2 CFAP74 FAM138A LOC100132287 PUSL1 CCNL2 LOC107985729 LOC105378948 LOC100129534 SSU72 ISG15 MIR200B GABRD CPSF3L LOC284600 TTLL10-AS1 LOC100506504 SLC35E2 LOC100134822 C1orf159 MIR6859-2 MIR6859-1 LOC101928626 CDK11B FNDC10 CALML6 LOC729737 OR4F5 LINC01128 CDK11A TMEM240 OR4F29 UBE2J2 NOC2L LOC100288069 MIR6808 LOC100287934 FAAP20 KLHL17
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FAM132A MIR200B TNFRSF18 MMP23B VWA1 MIR429 CPSF3L MIR6727 TTLL10-AS1 C1orf159 CPTP MIR6726 MIR200A LINC01342 CDK11B B3GALT6 MRPL20 AURKAIP1 FNDC10 ATAD3C ATAD3A TNFRSF4 TMEM240 MXRA8 MIB2 ANKRD65 TTLL10 LOC148413 UBE2J2 LOC102724312 SDF4 DVL1 TAS1R3 ACAP3 TMEM88B PUSL1 SCNN1D MIR6808 ATAD3B CCNL2 LOC107985729 SSU72
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM132A MIR200B TNFRSF18 AGRN MIR429 FAM87B LOC284600 TTLL10-AS1 LINC00115 C1orf159 PERM1 RNF223 HES4 MIR200A LINC01342 B3GALT6 LOC100130417 LOC107985728 LINC01128 TNFRSF4 TTLL10 UBE2J2 NOC2L SDF4 LOC100288175 PLEKHN1 SAMD11 LOC105378948 FAM41C KLHL17 ISG15
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain FAM132A MIR200B TNFRSF18 AGRN MIR429 CPSF3L LOC284600 MIR6727 TTLL10-AS1 C1orf159 PERM1 CPTP MIR6726 RNF223 HES4 MIR200A LINC01342 B3GALT6 MRPL20 AURKAIP1 LOC100130417 LOC107985728 TNFRSF4 MXRA8 ANKRD65 TTLL10 LOC148413 UBE2J2 NOC2L SDF4 DVL1 TAS1R3 ACAP3 TMEM88B PUSL1 LOC100288175 PLEKHN1 SCNN1D MIR6808 SAMD11 CCNL2 LOC105378948 KLHL17 ISG15
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain FAM132A TNFRSF4 MIR200B TNFRSF18 MIR429 TTLL10 TTLL10-AS1 UBE2J2 C1orf159 SDF4 RNF223 MIR200A LINC01342 SCNN1D B3GALT6 LOC105378948
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss FAM132A MIR200B TNFRSF18 MIR429 CPSF3L MIR6727 TTLL10-AS1 C1orf159 CPTP MIR6726 RNF223 MIR200A LINC01342 B3GALT6 AURKAIP1 TNFRSF4 MXRA8 TTLL10 UBE2J2 SDF4 DVL1 TAS1R3 ACAP3 PUSL1 SCNN1D MIR6808
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss SDF4 TNFRSF4 TNFRSF18 B3GALT6 TTLL10 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain FAM132A TNFRSF4 MIR200B TNFRSF18 MIR429 CPSF3L MIR6727 TTLL10 TTLL10-AS1 UBE2J2 SDF4 ACAP3 MIR6726 PUSL1 MIR200A SCNN1D B3GALT6

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