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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1225398 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363135_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR200A TTLL10 MIR6726 TNFRSF4 LOC100288175 CPTP LOC105378948 TAS1R3 TNFRSF18 UBE2J2 MIR6727 FAM132A CPSF3L SCNN1D RNF223 TTLL10-AS1 LINC01342 C1orf159 PUSL1 MIR429 ACAP3 MIR200B AGRN B3GALT6 SDF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100130417 TMEM88B MIR200A MIB2 TNFRSF4 LOC100288175 ATAD3C CPTP LOC100288069 NADK LOC100287934 SLC35E2B AURKAIP1 FNDC10 ANKRD65 LOC107985729 CCNL2 ATAD3A LINC01128 MIR6727 SCNN1D RNF223 TTLL10-AS1 CDK11A SLC35E2 MMP23B TMEM240 MIR200B VWA1 AGRN NOC2L B3GALT6 SDF4 HES4 ISG15 TTLL10 MIR6726 LINC00115 FAM87B LOC105378948 TAS1R3 TNFRSF18 CDK11B UBE2J2 LOC107985728 DVL1 LOC102724312 FAM132A CPSF3L LOC148413 PLEKHN1 MMP23A MXRA8 MRPL20 PERM1 LINC01342 ATAD3B SSU72 MIR6808 SAMD11 LOC284600 C1orf159 PUSL1 FAM41C KLHL17 MIR429 ACAP3
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 FAM132A B3GALT6 SDF4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TMEM88B MIB2 TNFRSF4 CALML6 CPTP LOC100288069 LOC105378591 LOC100506504 NADK MTND1P23 AURKAIP1 LINC01128 SCNN1D LOC102725121 LOC105378947 FAM138A FAAP20 LOC729737 TMEM52 VWA1 B3GALT6 ISG15 TTLL10 MIR6859-1 GABRD CFAP74 MTND2P28 OR4F29 LOC107985728 LOC102724312 LOC148413 LOC100134822 MMP23A LOC105378949 WASH7P OR4F16 ATAD3B SAMD11 C1orf159 LOC101928626 ACAP3 LOC100130417 MIR200A LOC100133331 LOC100288175 ATAD3C LOC100287934 SLC35E2B FNDC10 ANKRD65 LOC107985729 CCNL2 ATAD3A MIR6727 GNB1 RNF223 TTLL10-AS1 CDK11A SLC35E2 MMP23B SKI TMEM240 MIR200B AGRN OR4F5 NOC2L SDF4 HES4 LOC100129534 MIR6726 LINC00115 FAM87B LOC105378948 MIR6859-2 MIR1302-2 LOC100132287 TAS1R3 MIR6723 LOC105378592 TNFRSF18 CDK11B UBE2J2 LOC105378589 DVL1 DDX11L1 FAM132A CPSF3L PLEKHN1 LOC107984841 MXRA8 MRPL20 PERM1 LINC01342 SSU72 MIR6808 MORN1 LOC284600 PRKCZ PUSL1 FAM41C KLHL17 MIR429
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM88B MIR200A TTLL10 MIR6726 MIB2 TNFRSF4 ATAD3C CPTP TAS1R3 AURKAIP1 FNDC10 TNFRSF18 CDK11B ANKRD65 LOC107985729 UBE2J2 CCNL2 DVL1 LOC102724312 ATAD3A MIR6727 FAM132A CPSF3L SCNN1D LOC148413 TTLL10-AS1 MXRA8 MMP23B MRPL20 LINC01342 ATAD3B SSU72 MIR6808 C1orf159 PUSL1 MIR429 ACAP3 TMEM240 MIR200B VWA1 B3GALT6 SDF4
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 ISG15 LOC100130417 MIR200A TTLL10 LINC00115 FAM87B TNFRSF4 LOC100288175 LOC105378948 TNFRSF18 UBE2J2 LOC107985728 LINC01128 FAM132A RNF223 PLEKHN1 TTLL10-AS1 PERM1 LINC01342 SAMD11 LOC284600 C1orf159 FAM41C KLHL17 MIR429 MIR200B AGRN NOC2L B3GALT6 SDF4
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 ISG15 LOC100130417 TMEM88B MIR200A TTLL10 MIR6726 TNFRSF4 LOC100288175 CPTP LOC105378948 TAS1R3 AURKAIP1 TNFRSF18 ANKRD65 UBE2J2 LOC107985728 CCNL2 DVL1 MIR6727 FAM132A CPSF3L SCNN1D RNF223 LOC148413 PLEKHN1 TTLL10-AS1 MXRA8 MRPL20 PERM1 LINC01342 MIR6808 SAMD11 LOC284600 C1orf159 PUSL1 KLHL17 MIR429 ACAP3 MIR200B AGRN NOC2L B3GALT6 SDF4
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 MIR200A TTLL10 TNFRSF4 LOC105378948 LINC01342 TNFRSF18 C1orf159 UBE2J2 MIR429 MIR200B FAM132A SCNN1D B3GALT6 RNF223 SDF4
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR200A TTLL10 MIR6726 TNFRSF4 CPTP TAS1R3 AURKAIP1 TNFRSF18 UBE2J2 DVL1 MIR6727 FAM132A CPSF3L SCNN1D RNF223 TTLL10-AS1 MXRA8 LINC01342 MIR6808 C1orf159 PUSL1 MIR429 ACAP3 MIR200B B3GALT6 SDF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TTLL10-AS1 TTLL10 TNFRSF4 B3GALT6 SDF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 MIR200A TTLL10 MIR6726 TNFRSF4 TNFRSF18 UBE2J2 PUSL1 MIR429 ACAP3 MIR200B MIR6727 FAM132A CPSF3L SCNN1D B3GALT6 SDF4

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