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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:937852 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363422_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
BC024295.2 AAH24295.1
CN293867.1
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv14n54 Chr.1:934063 - 938178 on Build GRCh38 Gain SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain HES4 PERM1 LOC284600 LOC100130417 SAMD11 LOC100288175 LOC105378948 ISG15 RNF223 C1orf159 KLHL17 AGRN LOC107985728 PLEKHN1 NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PERM1 LOC105378592 MIR200A PRKCZ MIR6726 MTND1P23 FAM132A DDX11L1 GABRD MXRA8 DVL1 MIR429 SAMD11 LOC100288175 SKI ACAP3 LOC102725121 MIB2 LOC148413 TNFRSF18 LOC100287934 UBE2J2 LOC107985729 FAM41C FAAP20 MIR6727 LOC100133331 LOC100288069 MIR6859-2 MIR200B B3GALT6 TNFRSF4 TMEM52 PUSL1 LOC284600 AURKAIP1 SLC35E2B LOC100506504 CDK11B MRPL20 OR4F16 CDK11A GNB1 LOC100134822 MMP23B PLEKHN1 LINC00115 LOC100132287 OR4F29 TTLL10 RNF223 C1orf159 KLHL17 LOC107984841 OR4F5 TMEM88B SSU72 MMP23A MIR1302-2 LINC01342 LOC107985728 TTLL10-AS1 MORN1 ATAD3A CPTP MTND2P28 SDF4 LOC105378948 ATAD3C ISG15 LOC101928626 CPSF3L TAS1R3 SCNN1D NOC2L NADK LOC729737 MIR6808 TMEM240 ANKRD65 LOC100130417 SLC35E2 MIR6859-1 LOC105378591 LOC105378947 VWA1 LOC105378949 LOC100129534 WASH7P LOC102724312 HES4 ATAD3B CCNL2 CFAP74 FAM138A FAM87B MIR6723 AGRN LOC105378589 LINC01128 FNDC10 CALML6
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion HES4 PERM1 LOC284600 LOC100130417 SAMD11 LOC100288175 LOC105378948 ISG15 RNF223 C1orf159 KLHL17 AGRN LOC107985728 PLEKHN1 NOC2L
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion PERM1 KLHL17 LOC284600 LOC100130417 SAMD11 LOC107985728 PLEKHN1 NOC2L
dgv8n54 Chr.1:925754 - 943937 on Build GRCh38 Loss SAMD11
nsv544932 Chr.1:934429 - 938178 on Build GRCh38 Loss SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PERM1 MIR200A LOC100130417 TTLL10 FAM41C RNF223 C1orf159 KLHL17 MIR200B LINC01342 LOC107985728 TTLL10-AS1 TNFRSF4 HES4 LOC284600 MIR429 SDF4 SAMD11 LOC100288175 LOC105378948 ISG15 AGRN PLEKHN1 TNFRSF18 NOC2L
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain PERM1 LOC100130417 FAM41C RNF223 LOC100133331 C1orf159 KLHL17 LOC100288069 LOC107984841 MTND1P23 LOC105378947 LOC107985728 HES4 LOC284600 MTND2P28 SAMD11 FAM87B LOC100288175 LOC105378948 ISG15 OR4F16 MIR6723 LOC101928626 AGRN LINC01128 PLEKHN1 NOC2L LOC100287934 LINC00115
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PERM1 MIR200A MIR6726 TTLL10 RNF223 C1orf159 KLHL17 TMEM88B SSU72 FAM132A MMP23A LINC01342 LOC107985728 TTLL10-AS1 ATAD3A MXRA8 CPTP DVL1 MIR429 SDF4 SAMD11 LOC100288175 LOC105378948 ATAD3C ISG15 ACAP3 MIB2 LOC148413 CPSF3L TAS1R3 SCNN1D TNFRSF18 NOC2L NADK LOC100287934 MIR6808 TMEM240 ANKRD65 LOC100130417 UBE2J2 LOC107985729 FAM41C MIR6727 LOC100288069 SLC35E2 VWA1 MIR200B B3GALT6 TNFRSF4 PUSL1 LOC102724312 HES4 ATAD3B CCNL2 LOC284600 AURKAIP1 FAM87B SLC35E2B CDK11B MRPL20 CDK11A AGRN LINC01128 FNDC10 MMP23B PLEKHN1 LINC00115
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication LOC284600 LOC100130417 SAMD11 FAM87B OR4F16 FAM41C LOC100133331 LOC100288069 LOC107984841 LINC01128 LOC107985728 LOC100287934 LINC00115
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PERM1 MIR200A LOC100130417 UBE2J2 TTLL10 FAM41C RNF223 C1orf159 KLHL17 FAM132A MIR200B LINC01342 LOC107985728 B3GALT6 TTLL10-AS1 TNFRSF4 HES4 LOC284600 MIR429 SDF4 SAMD11 FAM87B LOC100288175 LOC105378948 ISG15 AGRN LINC01128 PLEKHN1 TNFRSF18 NOC2L LINC00115
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication LOC284600 LINC01128 LOC100130417 SAMD11 FAM87B LOC107985728 LOC100287934 FAM41C LINC00115
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PERM1 ANKRD65 MIR200A MIR6726 LOC100130417 UBE2J2 TTLL10 RNF223 MIR6727 C1orf159 KLHL17 TMEM88B FAM132A MIR200B LINC01342 LOC107985728 B3GALT6 TTLL10-AS1 TNFRSF4 PUSL1 HES4 MXRA8 CPTP CCNL2 DVL1 LOC284600 MIR429 AURKAIP1 SDF4 SAMD11 LOC100288175 LOC105378948 ISG15 MRPL20 ACAP3 AGRN LOC148413 CPSF3L TAS1R3 SCNN1D PLEKHN1 TNFRSF18 NOC2L MIR6808
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss HES4 PERM1 KLHL17 AGRN LOC284600 LOC100130417 SAMD11 LOC107985728 ISG15 PLEKHN1 NOC2L
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain HES4 PERM1 KLHL17 LOC284600 LINC01128 LOC100130417 SAMD11 LOC107985728 PLEKHN1 NOC2L FAM41C
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728
nsv544924 Chr.1:934170 - 938178 on Build GRCh38 Gain+Loss SAMD11

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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